Profiles

Prasad Patil, PhD

Assistant Professor, Biostatistics - Boston University School of Public Health

Biography

Dr. Patil is a former postdoctoral research fellow at the Harvard Chan School of Public Health Department of Biostatistics/Dana-Farber Cancer Institute Department of Biostatistics and Computational Biology with Giovanni Parimigiani. He completed his PhD in Biostatistics from the Johns Hopkins Bloomberg School of Public Health with Jeff Leek. His professional interests include personalized medicine, genomics, prediction, data visualization, and study reproducibility/replicability.

Dr. Patil is currently working on:
- Multi-study prediction
- Statistical definitions for reproducibility and replicability.
- Stable and interpretable prediction methods for gene expression data. The contexts are cancer risk classifcation and survival prediction.
- Assessing the additional value a genomic signature can provide beyond standard clinical measurements in a randomized trial setting.
- Interactive health visualizations executable in one line from R.
- Automated analysis templates with the ability to compare results after parameters have been changed.

Education

  • Johns Hopkins University, PhD Field of Study: Biostatistics
  • New York University, BA Field of Study: Mathematics/Computer Science

Classes Taught

  • SPHBS803
  • SPHBS845
  • SPHBS901

Publications

  • Published on 12/9/2021

    Flam-Ross JM, Lown J, Patil P, White LF, Wang J, Perry A, Bailer D, McKenzie M, Thigpen A, Newman R, Lincoln M, Mckinney T, Bernson D, Barocas JA. Factors associated with opioid-involved overdose among previously incarcerated people in the U.S.: A community engaged narrative review. Int J Drug Policy. 2022 02; 100:103534. PMID: 34896932.

    Read At: PubMed
  • Published on 11/10/2021

    Spangler KR, Patil P, Peng X, Levy JI, Lane KJ, Tieskens KF, Carnes F, Klevens RM, Erdman EA, Troppy TS, Fabian MP, Leibler JH. Community predictors of COVID-19 cases and deaths in Massachusetts: Evaluating changes over time using geospatially refined data. Influenza Other Respir Viruses. 2022 03; 16(2):213-221. PMID: 34761531.

    Read At: PubMed
  • Published on 7/16/2021

    Tieskens KF, Patil P, Levy JI, Brochu P, Lane KJ, Fabian MP, Carnes F, Haley BM, Spangler KR, Leibler JH. Time-varying associations between COVID-19 case incidence and community-level sociodemographic, occupational, environmental, and mobility risk factors in Massachusetts. BMC Infect Dis. 2021 Jul 16; 21(1):686. PMID: 34271870.

    Read At: PubMed
  • Published on 7/12/2021

    Zhang Y, Patil P, Johnson WE, Parmigiani G. Robustifying genomic classifiers to batch effects via ensemble learning. Bioinformatics. 2021 07 12; 37(11):1521-1527. PMID: 33245114.

    Read At: PubMed
  • Published on 2/17/2021

    Tieskens K, Patil P, Levy JI, Brochu P, Lane KJ, Fabian MP, Carnes F, Haley BM, Spangler KR, Leibler JH. Time-varying associations between COVID-19 case incidence and community-level sociodemographic, occupational, environmental, and mobility risk factors in Massachusetts. Res Sq. 2021 Feb 17. PMID: 33619475.

    Read At: PubMed
  • Published on 1/17/2020

    Nudel J, Bishara AM, de Geus SWL, Patil P, Srinivasan J, Hess DT, Woodson J. Development and validation of machine learning models to predict gastrointestinal leak and venous thromboembolism after weight loss surgery: an analysis of the MBSAQIP database. Surg Endosc. 2021 01; 35(1):182-191. PMID: 31953733.

    Read At: PubMed
  • Published on 1/1/2020

    Ramchandran M, Patil P, Parmigiani G. Tree-Weighting for Multi-Study Ensemble Learners. Pac Symp Biocomput. 2020; 25:451-462. PMID: 31797618.

    Read At: PubMed
  • Published on 8/1/2019

    Patil P, Peng RD, Leek JT. Publisher Correction: A visual tool for defining reproducibility and replicability. Nat Hum Behav. 2019 Aug; 3(8):886. PMID: 31358976.

    Read At: PubMed
  • Published on 7/1/2019

    Patil P, Peng RD, Leek JT. A visual tool for defining reproducibility and replicability. Nat Hum Behav. 2019 07; 3(7):650-652. PMID: 31209370.

    Read At: PubMed
  • Published on 3/12/2018

    Patil P, Parmigiani G. Training replicable predictors in multiple studies. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):2578-2583. PMID: 29531060.

    Read At: PubMed

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