Publications

2026

Grifno, G.N., Kahvecioglu, H.A., LeBourdais, Travnik V, R. Banerji R, Wangsrikun W, Shi L, Bozal SB, Suh H, Raslan AA, Batgidis A, Kang B, Deng F, Dalton C, Tsao A, Castle L, Ligresti G, Mizgerd J, Longest W, Hindle M, Saltzman WM, Butler J, Suki B, Nia HT “Real-time single-particle imaging of functional lungs reveals mosaic-like patterns of aerosol deposition in alveoli.” Nat. Biomed. Eng (2026). https://doi.org/10.1038/s41551-026-01724-5

Dogru S, Simone N, Haciguzeller HZ, Alba GM, Layne MD, Albro MB. “Latent TGF- content of articular cartilage with development and age.” Connect Tissue Res, 2026 Jan; 67(1)2-12. https://doi.org/10.1080/03008207.2025.2543383

Saha A, Jones JM, Plummer A, Larkin JW. “Formation of a swelling gel underlies a morphological transition in Bacillus subtilis biofilms.” bioRxiv, 2026.02.20.707077. https://doi.org/10.64898/2026.02.20.707077

Liu FA, Dawes BA, Torg WJ, Manichelli E, Peter JC, Kamenetska M. “Single Molecule Force Measurements Reveal Energy Stabilization of Theophylline Aptamer RNA Switch Required for Gene Control.” ACS Phys. Chem Au 2026, 6, 2, 301–307. https://doi.org/10.1021/acsphyschemau.5c00109

Hall JK, Deng Y, Kontodimas K, Nia H, Varelas X, Lutchen KR, Bates J, Suki B. “A large-scale balloon model of confluent cells validates stress inference from geometry.” NPJ Biol Phys Mech. 2026;3(1):1. https://doi.org/10.1038/s44341-025-00031-5

Halvorsen, S.C., Mlawer, S.J., Then, R.M., Stein, T., Connizzo, B.K., and Zhang, Y., 2026. “Age-Related Biomechanical and Structural Remodeling of Human Middle Cerebral Arteries.” Under revision.

2025

2024

Kobeissi H, Gao X, DePalma SJ, Ewoldt JK, Wang MC, Das SL, Jilberto J, Nordsletten D, Baker BM, Chen CS, Lejeune E. “MicroBundlePillarTrack: A Python package for automated segmentation, tracking, and analysis of pillar deflection in cardiac micro-bundles.” MicroPubl Biol. 2024 Jul 23;2024:10.17912/micropub. biology.001231. doi: 10.17912/micropub.biology.001231. doi: 10.17912/micropub.biology.001231

Aggouras AN, Stowe EJ, Mlawer SJ, Connizzo BK. “Aged Tendons Exhibit Altered Mechanisms of Strain-Dependent Extracellular Matrix Remodeling.” J Biomech Eng. 2024 Jul 1;146(7):071009. PMID: 38584416; PMCID: PMC11080950. https://doi.org/10.1115/1.4065270

Wang T, Kim SY, Peng Y, Zheng J, Layne MD, Murphy-Ullrich JE, Albro MB. “Autoinduction-Based Quantification of In Situ TGF-b Activity in Native and Engineered Cartilage.” Tissue Eng Part C Methods. 2024 Nov; 30(11):522-532. PMID: 39311474

Li L, Griebel ME, Uroz M, Bubli SY, Gagnon KA, Trappmann B, Baker BM, Eyckmans J, Chen CS, “A Protein-Adsorbent Hydrogel with Tunable Stiffness for Tissue Culture Demonstrates Matrix-Dependent Stiffness Responses.” Adv. Funct. Mater. 2024, 34, 2309567. https://doi.org/10.1002/adfm.202309567

Stowe EJ, Keller MR, Connizzo BK. “Cellular senescence impairs tendon extracellular matrix remodeling in response to mechanical unloading.” Aging Cell. 2024 Nov;23(11):e14278. doi: 10.1111/acel.14278. Epub 2024 Jul 22. PMID: 39039843; PMCID: PMC11561669. https://doi.org/10.1111/acel.14278Digital Object Identifier (DOI)

Zheng Siyi, Banerji R, LeBourdais R, Zhang Sue, DuBois E, O’Shea T, Nia HT. “Alteration of mechanical stresses in the murine brain by age and hemorrhagic stroke.” PNAS Nexus, Volume 3, Issue 4, April 2024, pgae141, https://doi.org/10.1093/pnasnexus/pgae141

Etesami NS, Barker KA, Shenoy AT, De Ana CL, Arafa EI, Grifno GN, Matschulat AM, Vannini ME, Pihl RMF, Breen MP, Soucy AM, Goltry WN, Ha CT, Betsuyaku H, Browning JL, Varelas X, Traber KE, Jones MR, Quinton LJ, Maglione PJ, Nia HT, Belkina AC and Mizgerd JP (2024). “B cells in the pneumococcus-infected lung are heterogeneous and require CD4+ T cell help including CD40L to become resident memory B cells.” Front. Immunol. 15:1382638. https://doi.org/10.3389/fimmu.2024.1382638

LeBourdais R, Grifno GN, Banerji R, Regan K, Suki B and Nia HT (2024) “Mapping the strain-stiffening behavior of the lung and lung cancer at microscale resolution using the crystal ribcage.” Front. Netw. Physiol. 4:1396593. doi: 10.3389/fnetp.2024.1396593 https://doi.org/10.3389/fnetp.2024.1396593

2023

2022

Li HS, Wong NM, Tague E, Ngo JT, Khalil AS, Wong WW. “High-performance multiplex drug-gated CAR circuits.” Cancer Cell. 2022, 40(11):1294-1305.e4. https://doi.org/10.1016/j.ccell.2022.08.008

Alhousami T, Diny M, Ali F, Shin J, Kumar G, Kumar V, Campbell J, Noonan V, Hanna G, Denis G, Monti S, Kukuuzinska, Varelas X, and Bais M. “Inhibition of LSD1 Attenuates Oral Cancer Development and Promotes Therapeutic Efficacy of Immune Checkpoint Blockade and YAP/TAZ Inhibition.” Molecular Cancer Research, 2022, 20(5): 712-721. https://doi.org/10.1158/1541-7786.MCR-21-0310

Das, S. L., Sutherland, B. P., Lejeune, E., Eyckmans, J., & Chen, C. S. (2022). “Mechanical response of cardiac microtissues to acute localized injury.” American Journal of Physiology-Heart and Circulatory Physiology, 323(4), H738–H748. https://doi.org/10.1152/ajpheart.00305.2022

Michas, C., Karakan, M. Ç., Nautiyal, P., Seidman, J. G., Seidman, C. E., Agarwal, A., Ekinci, K., Eyckmans, J., White, A. E., & Chen, C. S. (2022). “Engineering a living cardiac pump on a chip using high-precision fabrication.” Science Advances, 8(16). https://www.science.org/doi/10.1126/sciadv.abm3791

Tefft, J. B., Bays, J. L., Lammers, A., Kim, S., Eyckmans, J., & Chen, C. S. (2022). “Notch1 and Notch3 coordinate for pericyte-induced stabilization of vasculature.” American Journal of Physiology-Cell Physiology, 322(2), C185–C196. https://doi.org/10.1152/ajpcell.00320.2021

Abood, A., Mesner, L., Rosenow, W., Al-Barghouthi, B. M., Horowitz, N., Morgan, E. F., Gerstenfeld, L. C., & Farber, C. R. (2022). “Identification of Known and Novel Long Noncoding RNAs Potentially Responsible for the Effects of Bone Mineral Density (BMD) Genomewide Association Study (GWAS) Loci.” Journal of Bone and Mineral Research, 37(8), 1500–1510. https://doi.org/10.1002/jbmr.4622

Al-Barghouthi, B. M., Rosenow, W. T., Du, K.-P., Heo, J., Maynard, R., Mesner, L., Calabrese, G., Nakasone, A., Senwar, B., Gerstenfeld, L., Larner, J., Ferguson, V., Ackert-Bicknell, C., Morgan, E., Brautigan, D., & Farber, C. R. (2022). “Transcriptome-wide association study and eQTL colocalization identify potentially causal genes responsible for human bone mineral density GWAS associations.” ELife, 11, e77285. https://doi.org/10.1101/2021.10.12.464046

Auger, J. D., Naik, A. J., Murakami, A. M., Gerstenfeld, L. C., & Morgan, E. F. (2022). “Spatial assessment of femoral neck bone density and microstructure in hip osteoarthritis.” Bone Reports, 16, 101155. PMCID: PMC8693349

Bragdon, B. C., Bennie, A., Molinelli, A., Liu, Y., & Gerstenfeld, L. C. (2022). “Post natal expression of Prx1 labels appendicular restricted progenitor cell populations of multiple tissues.” Journal of Cellular Physiology, 237(5), 2550–2560. 10.1002/jcp.30728

Nakasone, A., Guang, Y., Wise, A., Kim, L., Babbin, J., Rathod, S., Mitchell, A. J., Gerstenfeld, L. C., & Morgan, E. F. (2022). “Structural features of subchondral bone cysts and adjacent tissues in hip osteoarthritis.” Osteoarthritis and Cartilage, 30(8), 1130–1139. https://doi.org/10.1016/j.joca.2022.03.013

Kroupa, K. R., Wu, M. I., Zhang, J., Jensen, M., Wong, W., Engiles, J. B., Schaer, T. P., Grinstaff, M. W., Snyder, B. D., Bergholt, M. S., & Albro, M. B. (2022). “Raman needle arthroscopy for in vivo molecular assessment of cartilage.” Journal of Orthopaedic Research, 40(6), 1338–1348. https://doi.org/10.1002/jor.25155

Bacon, K. L., Felson, D. T., Jafarzadeh, S. R., Kolachalama, V. B., Hausdorff, J. M., Gazit, E., Segal, N. A., Lewis, C. E., Nevitt, M. C., & Kumar, D. (2022). “Relation of gait measures with mild unilateral knee pain during walking using machine learning.” Scientific Reports, 12(1), Article 1. https://doi.org/10.1038/s41598-022-21142-2

Rabhi, N., Desevin, K., Belkina, A. C., Tilston-Lunel, A., Varelas, X., Layne, M. D., & Farmer, S. R. (2022). “Obesity-induced senescent macrophages activate a fibrotic transcriptional program in adipocyte progenitors.” Life Science Alliance, 5(5), e202101286. https://doi.org/10.26508/lsa.202101286

Li, J.-S., Tsai, T.-Y., Clancy, M. M., Lewis, C. L., Felson, D. T., & Li, G. (2022). “Cartilage contact characteristics of the knee during gait in individuals with obesity.” Journal of Orthopaedic Research, 40(11), 2480–2487. https://doi.org/10.1002/jor.25288

Yuan, Z., Herrmann, J., Murthy, S., Peters, K., Gerard, S. E., Nia, H. T., Lutchen, K. R., & Suki, B. (2022). “A Personalized Spring Network Representation of Emphysematous Lungs From CT Images.” Frontiers in Network Physiology, 2, 828157. https://doi.org/10.3389/fnetp.2022.828157

Huyan, C., Golden, A., Zhu, X., Mehta, P., & Sgro, A. (2022). “Identifying key network features coordinating robust collective signaling oscillations.” ADS, W04.003. https://ui.adsabs.harvard.edu/abs/2022APS..MARW04003H

Lu, D., Demissie, S., Horowitz, N. B., Gower, A. C., Lenburg, M. E., Alekseyev, Y. O., Hussein, A. I., Bragdon, B., Liu, Y., Daukss, D., Page, J. M., Webster, M. Z., Schlezinger, J. J., Morgan, E. F., & Gerstenfeld, L. C. (2022). “Temporal and Quantitative Transcriptomic Differences Define Sexual Dimorphism in Murine Postnatal Bone Aging.” JBMR Plus, 6(2), e10579. https://doi.org/10.1002/jbm4.10579

Zhang, S., Passaro, R., Regan, K., Hadzipasic, M., Grifno, G., Zheng, S., O’Connor, L., Chu, V., Kim, S. Y., Yang, J., Banerji, R., Karrobi, K., Roblyer, D., Grinstaff, M., & Nia, H. (2022). “In vivo multiscale measurements of solid stresses in tumors reveal scale-dependent stress transmission” [Preprint]. Nature. In Review.
https://doi.org/10.21203/rs.3.rs-1697924/v1

Karagianni, A., Matsuura, S., Gerstenfeld, L. C., & Ravid, K. (2022). “Inhibition of Osteoblast Differentiation by JAK2V617F Megakaryocytes Derived From Male Mice with Primary Myelofibrosis.” Frontiers in Oncology, 12, 929498. https://doi.org/10.3389/fonc.2022.929498

Milkovich, N., Gkousioudi, A., Seta, F., Suki, B., & Zhang, Y. (2022). “Harmonic Distortion of Blood Pressure Waveform as a Measure of Arterial Stiffness.” Frontiers in Bioengineering and Biotechnology, 10.
https://www.frontiersin.org/articles/10.3389/fbioe.2022.842754

Bunde, K. A., Stamenović, D., & Smith, M. L. (2022). “Pattern Generation for Micropattern Traction Microscopy.” Journal of Visualized Experiments, 180, 63628. https://doi.org/10.3791/63628

Figueiredo, J., Ferreira, R. M., Xu, H., Gonçalves, M., Barros-Carvalho, A., Cravo, J., Maia, A. F., Carneiro, P., Figueiredo, C., Smith, M. L., Stamenović, D., Morais-de-Sá, E., & Seruca, R. (2022). “Integrin β1 orchestrates the abnormal cell-matrix attachment and invasive behaviour of E-cadherin dysfunctional cells.” Gastric Cancer, 25(1), 124–137. https://doi.org/10.1007/s10120-021-01239-9

Xu, H., Bunde, K. A., Figueiredo, J., Seruca, R., Smith, M. L., & Stamenović, D. (2022). “Differential Impacts on Tensional Homeostasis of Gastric Cancer Cells Due to Distinct Domain Variants of E-Cadherin.” Cancers, 14(11), Article 11. https://doi.org/10.3390/cancers14112690

Bartolák-Suki, E., Mondoñedo, J. R., & Suki, B. (2022). “Mechano-inflammatory sensitivity of ACE2: Implications for the regional distribution of SARS-CoV-2 injury in the lung.” Respiratory Physiology & Neurobiology, 296, 103804.
https://doi.org/10.1016/j.resp.2021.103804

Shi, L., Herrmann, J., Bou Jawde, S., Bates, J. H. T., Nia, H. T., & Suki, B. (2022). “Modeling the influence of gravity and the mechanical properties of elastin and collagen fibers on alveolar and lung pressure–volume curves.” Scientific Reports, 12(1), 12280. https://doi.org/10.1038/s41598-022-16650-0

Gkousioudi, A., Yu, X., Ferruzzi, J., Qian, J., Wainford, R. D., Seta, F., & Zhang, Y. (2022). “Biomechanical Properties of Mouse Carotid Arteries With Diet-Induced Metabolic Syndrome and Aging.” Frontiers in Bioengineering and Biotechnology, 10, 862996. https://doi.org/10.3389/fbioe.2022.862996

2021

Kroupa K, Wu MI, Zhang J, Jensen M, Wong W, Engiles J, Schaer T, Grinstaff M, Snyder B, Bergholt M, and Albro M. Raman needle arthroscopy for in vivo molecular assessment of cartilage. Journal of Orthopaedic Research, 2021, 40(6):1338-1348. Read

Joshi, V.G., Chindera, K., Bais, M.V. et al. Novel peptide (RATH) mediated delivery of peptide nucleic acids for antiviral interventions. Appl Microbiol Biotechnol 105, 6669–6677 (2021). Read

Agarwal, R., Paulo, J. A., Toepfer, C. N., Ewoldt, J. K., Sundaram, S., Chopra, A., Zhang, Q., Gorham, J., DePalma, S. R., & Chen, C. S. (2021). Filamin C cardiomyopathy variants cause protein and lysosome accumulation. Circulation Research, 129(7), 751–766. Read

Chen, D.-Y., Khan, N., Close, B. J., Goel, R. K., Blum, B., Tavares, A. H., Kenney, D., Conway, H. L., Ewoldt, J. K., & Chitalia, V. C. (2021). SARS-CoV-2 disrupts proximal elements in the JAK-STAT pathway. Journal of Virology, 95(19), e00862-21. Read

Das, S. L., Bose, P., Lejeune, E., Reich, D. H., Chen, C., & Eyckmans, J. (2021). Extracellular matrix alignment directs provisional matrix assembly and three dimensional fibrous tissue closure. Tissue Engineering Part A, 27(23–24), 1447–1457. Read

Javor, J., Ewoldt, J. K., Cloonan, P. E., Chopra, A., Luu, R. J., Freychet, G., Zhernenkov, M., Ludwig, K., Seidman, J. G., & Seidman, C. E. (2021). Probing the subcellular nanostructure of engineered human cardiomyocytes in 3D tissue. Microsystems & Nanoengineering, 7(1), 10. Read

Jayne, R. K., Karakan, M. Ç., Zhang, K., Pierce, N., Michas, C., Bishop, D. J., Chen, C. S., Ekinci, K. L., & White, A. E. (2021). Direct laser writing for cardiac tissue engineering: A microfluidic heart on a chip with integrated transducers. Lab on a Chip, 21(9), 1724–1737. Read

Kim, S., Uroz, M., Bays, J. L., & Chen, C. S. (2021). Harnessing mechanobiology for tissue engineering. Developmental Cell, 56(2), 180–191. Read

Kostecki, G. M., Shi, Y., Chen, C. S., Reich, D. H., Entcheva, E., & Tung, L. (2021). Optogenetic current in myofibroblasts acutely alters electrophysiology and conduction of co-cultured cardiomyocytes. Scientific Reports, 11(1), 1–12. Read

Singh, D. K., Singh, B., Ganatra, S. R., Gazi, M., Cole, J., Thippeshappa, R., Alfson, K. J., Clemmons, E., Gonzalez, O., & Escobedo, R. (2021). Responses to acute infection with SARS-CoV-2 in the lungs of rhesus macaques, baboons and marmosets. Nature Microbiology, 6(1), 73–86. Read

Song, J., Michas, C., Chen, C. S., White, A. E., & Grinstaff, M. W. (2021). Controlled cell alignment using two-photon direct laser writing-patterned hydrogels in 2D and 3D. Macromolecular Bioscience, 21(5), 2100051. Read

Tefft, J. B., Chen, C. S., & Eyckmans, J. (2021). Reconstituting the dynamics of endothelial cells and fibroblasts in wound closure. APL Bioengineering, 5(1), 016102. Read

Ward, T., Tai, W., Morton, S., Impens, F., Van Damme, P., Van Haver, D., Timmerman, E., Venturini, G., Zhang, K., & Jang, M. Y. (2021). Mechanisms of congenital heart disease caused by NAA15 haploinsufficiency. Circulation Research, 128(8), 1156–1169. Read

Zhang, K., Cloonan, P. E., Sundaram, S., Liu, F., Das, S. L., Ewoldt, J. K., Bays, J. L., Tomp, S., Toepfer, C. N., & Marsiglia, J. D. (2021). Plakophilin-2 truncating variants impair cardiac contractility by disrupting sarcomere stability and organization. Science Advances, 7(42), eabh3995. Read

Zhou, D. W., Fernández-Yagüe, M. A., Holland, E. N., García, A. F., Castro, N. S., O’Neill, E. B., Eyckmans, J., Chen, C. S., Fu, J., & Schlaepfer, D. D. (2021). Force-FAK signaling coupling at individual focal adhesions coordinates mechanosensing and microtissue repair. Nature Communications, 12(1), 2359. Read

Izu, Y., Adams, S. M., Connizzo, B. K., Beason, D. P., Soslowsky, L. J., Koch, M., & Birk, D. E. (2021). Collagen XII mediated cellular and extracellular mechanisms regulate establishment of tendon structure and function. Matrix Biology, 95, 52–67. Read

Siadat, S. M., Zamboulis, D. E., Thorpe, C. T., Ruberti, J. W., & Connizzo, B. K. (2021). Tendon Extracellular Matrix Assembly, Maintenance and Dysregulation Throughout Life. In J. Halper (Ed.), Progress in Heritable Soft Connective Tissue Diseases (pp. 45–103). Springer International Publishing. Read

Chen, H., Deng, J., Cui, Q., Chanda, B., & Henzler-Wildman, K. (2021). Mapping temperature-dependent conformational change in the voltage-sensing domain of an engineered heat-activated K+ channel. Proceedings of the National Academy of Sciences, 118(14), e2017280118. Read

Cheng, R., Lai, R., Peng, C., Lopez, J., Li, Z., Naowarojna, N., Li, K., Wong, C., Lee, N., & Whelan, S. A. (2021). Implications for an Imidazole-2-yl Carbene Intermediate in the Rhodanase-Catalyzed C–S Bond Formation Reaction of Anaerobic Ergothioneine Biosynthesis. ACS Catalysis, 11(6), 3319–3334. Read

Craven, S. J., Condon, S. G., Diaz-Vazquez, G., Cui, Q., & Senes, A. (2021). Nonideal polar residues in the core of the coiled coil of FtsLB are critical for modulating its stability and activation. BioRxiv, 2021–04. Read

Cui, A. Y., & Cui, Q. (2021). Modulation of nanoparticle diffusion by surface ligand length and charge: Analysis with molecular dynamics simulations. The Journal of Physical Chemistry B, 125(17), 4555–4565. Read

Cui, Q., Pal, T., & Xie, L. (2021). Biomolecular QM/MM simulations: What are some of the “burning issues”? The Journal of Physical Chemistry B, 125(3), 689–702. Read

Deng, J., & Cui, Q. (2021). Reverse Protonation of Buried Ion-Pairs in Staphylococcal Nuclease Mutants. Journal of Chemical Theory and Computation, 17(7), 4550–4563. Read

Fang, J., Leichter, S. M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.-M., Ren, W., Zhai, J., Cui, Q., & Zhong, X. (2021). Substrate deformation regulates DRM2-mediated DNA methylation in plants. Science Advances, 7(23), eabd9224. Read

Gregory, M. T., Gao, Y., Cui, Q., & Yang, W. (2021). Multiple deprotonation paths of the nucleophile 3′-OH in the DNA synthesis reaction. Proceedings of the National Academy of Sciences, 118(23), e2103990118. Read

Maag, D., Mast, T., Elstner, M., Cui, Q., & Kubař, T. (2021). O to bR transition in bacteriorhodopsin occurs through a proton hole mechanism. Proceedings of the National Academy of Sciences, 118(39), e2024803118. Read

Mandal, T., Spagnolie, S. E., Audhya, A., & Cui, Q. (2021). Protein-induced membrane curvature in coarse-grained simulations. Biophysical Journal, 120(15), 3211–3221. Read

Ren, W., Fan, H., Grimm, S. A., Kim, J. J., Li, L., Guo, Y., Petell, C. J., Tan, X.-F., Zhang, Z.-M., & Coan, J. P. (2021). DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications, 12(1), 2490. Read

Voegtle, M. J., Pal, T., Pennathur, A. K., Menachekanian, S., Patrow, J. G., Sarkar, S., Cui, Q., & Dawlaty, J. M. (2021). Interfacial polarization and ionic structure at the ionic liquid–metal interface studied by vibrational spectroscopy and molecular dynamics simulations. The Journal of Physical Chemistry B, 125(10), 2741–2753. Read

Zeng, J., Weng, J., Zhang, Y., Xia, F., Cui, Q., & Xu, X. (2021). Conformational Features of Ras: Key Hydrogen-Bonding Interactions of Gln61 in the Intermediate State during GTP Hydrolysis. The Journal of Physical Chemistry B, 125(31), 8805–8813. Read

Zhang, Y., Dahal, U., Feng, Z. V., Rosenzweig, Z., Cui, Q., & Hamers, R. J. (2021). Influence of surface ligand molecular structure on phospholipid membrane disruption by cationic nanoparticles. Langmuir, 37(24), 7600–7610. Read

Zhi, B., Yao, X., Wu, M., Mensch, A., Cui, Y., Deng, J., Duchimaza-Heredia, J. J., Trerayapiwat, K. J., Niehaus, T., & Nishimoto, Y. (2021). Multicolor polymeric carbon dots: Synthesis, separation and polyamide-supported molecular fluorescence. Chemical Science, 12(7), 2441–2455. Read

Castellanos, L. E., Balliro, C. A., Sherwood, J. S., Jafri, R., Hillard, M. A., Greaux, E., Selagamsetty, R., Zheng, H., El-Khatib, F. H., & Damiano, E. R. (2021). Performance of the insulin-only iLet bionic pancreas and the bihormonal iLet using dasiglucagon in adults with type 1 diabetes in a home-use setting. Diabetes Care, 44(6), e118–e120. Read

Rayannavar, A., Mitteer, L. M., Balliro, C. A., El-Khatib, F. H., Lord, K. L., Hawkes, C. P., Ballester, L. S., Damiano, E. R., Russell, S. J., & De León, D. D. (2021). The bihormonal bionic pancreas improves glycemic control in individuals with hyperinsulinism and postpancreatectomy diabetes: A pilot study. Diabetes Care, 44(11), 2582–2585. Read

Rayannavar, A., Mitteer, L. M., Balliro, C. A., El-Khatib, F. H., Lord, K. L., Hawkes, C. P., Ballester, L. S., Damiano, E. R., Russell, S. J., & De Leon, D. D. (2021). To determine whether the bihormonal bionic pancreas (BHBP) improves glycemic control and reduces hypoglycemia in individuals with congenital hyperinsulinism (HI) and postpancreatectomy diabetes (PPD) compared with usual care (UC). Diabetes Care, 44. Read

Russell, S. J., Balliro, C., Ekelund, M., El-Khatib, F., Graungaard, T., Greaux, E., Hillard, M., Jafri, R. Z., Rathor, N., & Selagamsetty, R. (2021). Improvements in glycemic control achieved by altering the t max setting in the iLet® bionic pancreas when using fast-acting insulin aspart: A randomized trial. Diabetes Therapy, 12(7), 2019–2033. Read

Divieti Pajevic, P. (2021). Bone and blood: IL-19 to the rescue. Blood, The Journal of the American Society of Hematology, 137(25), 3467–3468. Read

Uda, Y., Saini, V., Petty, C. A., Alshehri, M., Shi, C., Spatz, J. M., Santos, R., Newell, C. M., Huang, T. Y., Kochen, A., Kim, J. W., Constantinou, C. K., Saito, H., Held, K. D., Hesse, E., & Pajevic, P. D. (2021). Parathyroid hormone signaling in mature osteoblasts/osteocytes protects mice from age-related bone loss. Aging (Albany NY), 13(24), 25607-25642. Read

Uda, Y., Santos, R., Kochen, A., Newell, C., Huang, T. Y., & Pajevic, P. D. (2021). PTH Protects Osteocytes From Oxidative Stress and Cellular Senescence. Journal of the Endocrine Society, 5(Suppl 1), A239. read

Staab, J. S., Kolb, A. L., Tomlinson, R. E., Pajevic, P. D., Matheny Jr, R. W., & Hughes, J. M. (2021). Emerging evidence that adaptive bone formation inhibition by non-steroidal anti-inflammatory drugs increases stress fracture risk. Experimental Biology and Medicine, 246(9), 1104–1111. Read

Uda, Y., Saini, V., Petty, C. A., Alshehri, M., Shi, C., Spatz, J. M., Santos, R., Newell, C. M., Huang, T. Y., & Kochen, A. (2021). Parathyroid hormone signaling in mature osteoblasts/osteocytes protects mice from age-related bone loss. Aging (Albany NY), 13(24), 25607. Read

Uda, Y., Spatz, J. M., Hussein, A., Garcia, J. H., Lai, F., Dedic, C., Fulzele, K., Dougherty, S., Eberle, M., & Adamson, C. (2021). Global transcriptomic analysis of a murine osteocytic cell line subjected to spaceflight. The FASEB Journal, 35(5), e21578. Read

Staab, Jeffery S., Alexander L. Kolb, Ryan E. Tomlinson, Paola Divieti Pajevic, Ronald W. Matheny Jr, and Julie M. Hughes. “Emerging Evidence That Adaptive Bone Formation Inhibition by Non-Steroidal Anti-Inflammatory Drugs Increases Stress Fracture Risk.” Experimental Biology and Medicine 246, no. 9 (2021): 1104–11. Read.

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Wu, Y., Loaiza, J., Banerji, R., Blouin, O., & Morgan, E. F. (2021b). Structure-Function Relationships of the Vertebral Endplate [Preprint]. Bioengineering. https://doi.org/10.1101/2021.05.14.444250

Kajuluri, L. P., Singh, K., & Morgan, K. G. (2021). Vascular aging, the vascular cytoskeleton and aortic stiffness. Exploration of Medicine, 2, 186–197. https://doi.org/10.37349/emed.2021.00041

Singh, K., Kim, A. B., & Morgan, K. G. (2021). Non-muscle myosin II regulates aortic stiffness through effects on specific focal adhesion proteins and the non-muscle cortical cytoskeleton. Journal of Cellular and Molecular Medicine, 25(5), 2471–2483. https://doi.org/10.1111/jcmm.16170

Valisno, J. A. C., May, J., Singh, K., Helm, E. Y., Venegas, L., Budbazar, E., Goodman, J. B., Nicholson, C. J., Avram, D., Cohen, R. A., Mitchell, G. F., Morgan, K. G., & Seta, F. (2021). BCL11B Regulates Arterial Stiffness and Related Target Organ Damage. Circulation Research, 128(6), 755–768. https://doi.org/10.1161/CIRCRESAHA.120.316666

Wang, Y., Taylor, E., Zikopoulos, B., Seta, F., Huang, N., Hamilton, J. A., Kantak, K. M., & Morgan, K. G. (2021). Aging-induced microbleeds of the mouse thalamus compared to sensorimotor and memory defects. Neurobiology of Aging, 100, 39–47. https://doi.org/10.1016/j.neurobiolaging.2020.11.017

Jones, D., Wang, Z., Chen, I. X., Zhang, S., Banerji, R., Lei, P.-J., Zhou, H., Xiao, V., Kwong, C., van Wijnbergen, J. W. M., Pereira, E. R., Vakoc, B. J., Huang, P., Nia, H. T., & Padera, T. P. (2021). Solid stress impairs lymphocyte infiltration into lymph-node metastases. Nature Biomedical Engineering, 5(12), Article 12. https://doi.org/10.1038/s41551-021-00766-1

Subramaniam, S., Hekman, R. M., Jayaraman, A., O’Connell, A. K., Montanaro, P., Blum, B., Kenney, D., Ericsson, M., Ravid, K., Crossland, N. A., Emili, A., Douam, F., & Bosmann, M. (2021). Platelet proteome analysis reveals an early hyperactive phenotype in SARS-CoV-2-infected humanized ACE2 mice (p. 2021.08.19.457020). bioRxiv. https://doi.org/10.1101/2021.08.19.457020

Freid, R., Hussein, A. I., & Schlezinger, J. J. (2021). Tributyltin protects against ovariectomy-induced trabecular bone loss in C57BL/6J mice with an attenuated effect in high fat fed mice. Toxicology and Applied Pharmacology, 431, 115736. https://doi.org/10.1016/j.taap.2021.115736

Kassotis, C. D., Hoffman, K., Völker, J., Pu, Y., Veiga-Lopez, A., Kim, S. M., Schlezinger, J. J., Bovolin, P., Cottone, E., Saraceni, A., Scandiffio, R., Atlas, E., Leingartner, K., Krager, S., Tischkau, S. A., Ermler, S., Legler, J., Chappell, V. A., Fenton, S. E., … Stapleton, H. M. (2021). Reproducibility of adipogenic responses to metabolism disrupting chemicals in the 3T3-L1 pre-adipocyte model system: An interlaboratory study. Toxicology, 461, 152900. https://doi.org/10.1016/j.tox.2021.152900

Kim, S., Reed, E., Monti, S., & Schlezinger, J. J. (n.d.). A Data-Driven Transcriptional Taxonomy of Adipogenic Chemicals to Identify White and Brite Adipogens. Environmental Health Perspectives, 129(7), 077006. https://doi.org/10.1289/EHP6886

Rodriguez, F., & Seta, F. (2021). Editorial: The Role of Sirtuin-1 in Cardiovascular and Renal Pathophysiology. Frontiers in Physiology, 12. https://www.frontiersin.org/articles/10.3389/fphys.2021.770386

Zhou, Y., Wan, X., Seidel, K., Zhang, M., Goodman, J. B., Seta, F., Hamburg, N., & Han, J. (2021). Aging and Hypercholesterolemia Differentially Affect the Unfolded Protein Response in the Vasculature of ApoE ^−/− Mice. Journal of the American Heart Association, 10(18), e020441. https://doi.org/10.1161/JAHA.120.020441

Banerji, R., Grifno, G. N., Shi, L., Smolen, D., LeBourdais, R., Muhvich, J., Eberman, C., Hiller, B., Lee, J., Regan, K., Zheng, S., Zhang, S. S., Jiang, J., Phil, R., Traber, K., Ligresti, G., Mizgerd, J. P., Suki, B., & Nia, H. T. (n.d.). Probing lung function at high spatiotemporal resolution using a novel crystal ribcage.

Casey, D., Mori, V., Herrmann, J., Suki, B., Janssen-Heininger, Y. M. W., & Bates, J. H. T. (2021). Local Fractal Dimension Variation of Collagen Structure in Idiopathic Pulmonary Fibrosis. TP126. TP126 STRUCTURE AND FUNCTION IN PARENCHYMAL LUNG DISEASES, A4651–A4651. https://doi.org/10.1164/ajrccm-conference.2021.203.1_MeetingAbstracts.A4651

Casey, D. T., Bou Jawde, S., Herrmann, J., Mori, V., Mahoney, J. M., Suki, B., & Bates, J. H. T. (2021). Percolation of collagen stress in a random network model of the alveolar wall. Scientific Reports, 11(1), Article 1. https://doi.org/10.1038/s41598-021-95911-w

Herrmann, J., Mori, V., Bates, J. H. T., & Suki, B. (2021). Mathematical Modeling to Understand Plausible Explanations of Hypoxemia in Early COVID-19. TP117. TP117 COVID-19 PATHOPHYSIOLOGY AND MODELLING, A4471–A4471. https://doi.org/10.1164/ajrccm-conference.2021.203.1_MeetingAbstracts.A4471

Murthy, S., Suki, B., Herrmann, J., Yuan, Z., Peters, K., & Kaczka, D. W. (2021). Personalized Pressure-Volume Curve of the Lung Through CT-Based Network Modeling. TP123. TP123 LUNG FUNCTION: FLOW, VOLUME, AND HETEROGENEITY, A4617–A4617. https://doi.org/10.1164/ajrccm-conference.2021.203.1_MeetingAbstracts.A4617

Sonnenberg, A. H., Taylor, E., Mondoñedo, J. R., Jawde, S. B., Amin, S. D., Song, J., Grinstaff, M. W., & Suki, B. (2021). Breath Hold Facilitates Targeted Deposition of Aerosolized Droplets in a 3D Printed Bifurcating Airway Tree. Annals of Biomedical Engineering, 49(2), 812–821. https://doi.org/10.1007/s10439-020-02623-9

Zeldich, D., Bou Jawde, S., Herrmann, J., Arnaout, L., Griffin, M., Grunfeld, N., Zhang, Y., Krishnan, R., Bartolák-Suki, E., & Suki, B. (2021). Stabilizing breathing pattern using local mechanical vibrations: Comparison of deterministic and stochastic stimulations in rodent models of apnea of prematurity. Biomedical Engineering Letters, 11(4), 383–392. https://doi.org/10.1007/s13534-021-00203-x

Kwak, D., & Thompson, L. V. (2021). Frailty: Past, present, and future? Sports Medicine and Health Science, 3(1), 1–10. https://doi.org/10.1016/j.smhs.2020.11.005

Alysandratos, K.-D., Russo, S. J., Petcherski, A., Taddeo, E. P., Acín-Pérez, R., Villacorta-Martin, C., Jean, J. C., Mulugeta, S., Rodriguez, L. R., Blum, B. C., Hekman, R. M., Hix, O. T., Minakin, K., Vedaie, M., Kook, S., Tilston-Lunel, A. M., Varelas, X., Wambach, J. A., Cole, F. S., … Kotton, D. N. (2021). Patient-specific iPSCs carrying an SFTPC mutation reveal the intrinsic alveolar epithelial dysfunction at the inception of interstitial lung disease. Cell Reports, 36(9), 109636. https://doi.org/10.1016/j.celrep.2021.109636

Baldan, S., Meriin, A. B., Yaglom, J., Alexandrov, I., Varelas, X., Xiao, Z.-X. J., & Sherman, M. Y. (n.d.). Regulation of Hippo pathway by Hsp70-Bag3 complex: Bag3 modulates YAP phosphorylation and its nuclear translocation. Journal of Cell Science. https://cob.silverchair-cdn.com/cob/content_public/journal/jcs/jam/10.1242_jcs.259107/1/jcs259107.pdf?Expires=1680123607&Signature=CzFh0Meu~i~KhSTEqmy9AkPDkWblTwtwKtxASfjpUIu2sUlsar2VinU2fhBZD-gKLuw3WS9NuYm~TgxPiqucI1GOLZyoNK8f~1~gkQd73p65WC3ZPtxerFUppQ6qbKhLdoxqUWuVWTrrhYoewCTEsX-uj9juKQOctFmUyyMu6EVkNYdH-Bi4Odh1npUi4BeBlPMoXILHCDGSjq5Ewa84U8-cLK2vXs~FRe~EYSqvF~GvYIFx6NcQ20M1v-mXREI8Btsyr0lUapiKAynHc259Z~IGFV3x30iWk~r-o9qZQfEIpet16owQ9UPWxfjzELz~TrgAxA9L1QiwJ~niOL4hpw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA

Baldan, S., Meriin, A. B., Yaglom, J., Alexandrov, I., Varelas, X., Xiao, Z.-X. J., & Sherman, M. Y. (2021). The Hsp70–Bag3 complex modulates the phosphorylation and nuclear translocation of Hippo pathway protein Yap. Journal of Cell Science, 134(23), jcs259107. https://doi.org/10.1242/jcs.259107

Chan, S., Smith, E., Gao, Y., Kwan, J., Blum, B. C., Tilston-Lunel, A. M., Turcinovic, I., Varelas, X., Cardamone, M. D., Monti, S., Emili, A., & Perissi, V. (2021). Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling. Frontiers in Cell and Developmental Biology, 8. https://www.frontiersin.org/articles/10.3389/fcell.2020.608044

Cheng, N., Stampouloglou, E., Federico, A., Monti, S., Szeto, G. L., & Varelas, X. (2021). Inhibiting Yap for improved T cell activation and anti-tumor immunity. The Journal of Immunology, 206(1_Supplement), 25.12. https://doi.org/10.4049/jimmunol.206.Supp.25.12

Dela Cruz, A., Kartha, V., Tilston-Lunel, A., Mi, R., Reynolds, T. L., Mingueneau, M., Monti, S., Jensen, J. L., Skarstein, K., Varelas, X., & Kukuruzinska, M. A. (2021). Gene expression alterations in salivary gland epithelia of Sjögren’s syndrome patients are associated with clinical and histopathological manifestations. Scientific Reports, 11(1), Article 1. https://doi.org/10.1038/s41598-021-90569-w

Federico, A., Kern, J., Varelas, X., & Monti, S. (2021). Structure Learning for Hierarchical Regulatory Networks (p. 2021.05.27.446022). bioRxiv. https://doi.org/10.1101/2021.05.27.446022

Hekman, R. M., Hume, A. J., Goel, R. K., Abo, K. M., Huang, J., Blum, B. C., Werder, R. B., Suder, E. L., Paul, I., Phanse, S., Youssef, A., Alysandratos, K. D., Padhorny, D., Ojha, S., Mora-Martin, A., Kretov, D., Ash, P. E. A., Verma, M., Zhao, J., … Emili, A. (2021). Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2. Molecular Cell, 81(1), 212. https://doi.org/10.1016/j.molcel.2020.12.028

Hicks-Berthet, J., Ning, B., Federico, A., Tilston-Lunel, A., Matschulat, A., Ai, X., Lenburg, M. E., Beane, J., Monti, S., & Varelas, X. (2021). Yap/Taz inhibit goblet cell fate to maintain lung epithelial homeostasis. Cell Reports, 36(2), 109347. https://doi.org/10.1016/j.celrep.2021.109347

Jones, D. L., Meridew, J. A., Link, P. A., Ducharme, M. T., Lydon, K. L., Choi, K. M., Caporarello, N., Tan, Q., Diaz Espinosa, A. M., Xiong, Y., Lee, J.-H., Ye, Z., Yan, H., Ordog, T., Ligresti, G., Varelas, X., & Tschumperlin, D. J. (2021). ZNF416 is a pivotal transcriptional regulator of fibroblast mechanoactivation. Journal of Cell Biology, 220(5), e202007152. https://doi.org/10.1083/jcb.202007152

Ning, B., Tilston-Lunel, A., Hicks-Berthet, J., Mazzilli, S. A., Beane, J. E., Varelas, X., & Lenburg, M. E. (2021). Abstract 2434: Transcriptional crosstalk between YAP, TEAD and TP63 is associated with early lung carcinogenesis. Cancer Research, 81(13_Supplement), 2434. https://doi.org/10.1158/1538-7445.AM2021-2434

Tilston-Lunel, A., Mazzilli, S., Kingston, N. M., Szymaniak, A. D., Hicks-Berthet, J., Kern, J. G., Abo, K., Reid, M. E., Perdomo, C., Wilson, A. A., Spira, A., Beane, J., & Varelas, X. (2021). Aberrant epithelial polarity cues drive the development of precancerous airway lesions. Proceedings of the National Academy of Sciences, 118(18), e2019282118. https://doi.org/10.1073/pnas.2019282118

Vittoria, M. A., Kingston, N., Xia, E., Hong, R., Huang, L., McDonald, S., Tilston- Lunel, A., Darp, R. A., Campbell, J., Lang, D., Xu, X., Ceol, C. J., Varelas, X., & Ganem, N. J. (2021). Inactivation of the Hippo Tumor Suppressor Pathway Promotes Melanoma [preprint]. BioRxiv. https://doi.org/10.1101/2021.05.04.442615

Dutta, A., Pihuleac, B., Chen, Y., Zong, C., Dal Negro, L., & Yang, C. (2021). Au@SiO2@Au core-shell-shell nanoparticles for enhancing photocatalytic activity of hematite. Materials Today Energy, 19, 100576. https://doi.org/10.1016/j.mtener.2020.100576

Jiang, Y., Huang, Y., Luo, X., Wu, J., Zong, H., Shi, L., Cheng, R., Zhu, Y., Jiang, S., Lan, L., Jia, X., Mei, J., Man, H.-Y., Cheng, J.-X., & Yang, C. (2021). Neural Stimulation In Vitro and In Vivo by Photoacoustic Nanotransducers. Matter, 4(2), 654–674. https://doi.org/10.1016/j.matt.2020.11.019

Shi, L., Jiang, Y., Fernandez, F. R., Chen, G., Lan, L., Man, H.-Y., White, J. A., Cheng, J.-X., & Yang, C. (2021). Non-genetic photoacoustic stimulation of single neurons by a tapered fiber optoacoustic emitter. Light: Science & Applications, 10(1), Article 1. https://doi.org/10.1038/s41377-021-00580-z

Zong, C., Xie, Y., Zhang, M., Huang, Y., Yang, C., & Cheng, J.-X. (2021). Plasmon-enhanced coherent anti-stokes Raman scattering vs plasmon-enhanced stimulated Raman scattering: Comparison of line shape and enhancement factor. The Journal of Chemical Physics, 154(3), 034201. https://doi.org/10.1063/5.0035163

Afzal, F., Zaman, M., Chaudhry, F., Afzal, D., Farahani, M., & Cancan, M. (2021). Computational analysis of new degree-based descriptors of Zig-Zag Benzenoid system [704]. 3, 418–424. https://doi.org/10.22034/ecc.2021.284310.1174

Ali, Y., Uwagbale, E., Visen, S., Kahn, A., Kalambay, J., & Zaman, M. (2021). COVID-19 and Legionella Co-Infection. Global Journal of Medical Case Reports, 24–28. https://www.scipublications.com/journal/index.php/gjmcr/article/view/170

Assessing the Relationship Between Zero-Dose Communities and Access to Selected Primary Healthcare Services for Children and Pregnant Women in Emergency Settings. (n.d.).

Ching, C., & Zaman, M. H. (2021). Impact of ciprofloxacin impurities on bacterial growth, antibiotic resistance development and content assays. Letters in Applied Microbiology, 73(2), 220–228. https://doi.org/10.1111/lam.13494

Dai, T., Zaman, M. H., Padula, W. V., & Davidson, P. M. (2021). Supply chain failures amid Covid‐19 signal a new pillar for global health preparedness. Journal of Clinical Nursing, 30(1–2), e1–e3. https://doi.org/10.1111/jocn.15400

Ferruzzi, J., DeCamp, S. J., Tsuda, V. M. K., Zaman, M. H., Fredberg, J. J., & Roblyer, D. M. (2021). Multiphoton fluorescence lifetime imaging of NADH reveals spatio-temporal patterns in cell metabolism during collective migration. Multiscale Imaging and Spectroscopy II, 11622, 116220G. https://doi.org/10.1117/12.2578743

Fuzail, M. A., Ahmed, B., Burke, D. L., Spjeldnæs, A. H., Horino, M., Ching, C., & Zaman, M. H. (2021). Microbiome research potential for developing holistic approaches to improve refugee health. Journal of Global Health Reports, 5, e2021094. https://doi.org/10.29392/001c.28997

Higgins, G., Kim, J., Ferruzzi, J., Abdalrahman, T., Franz, T., & Zaman, M. (2021). An exploratory study on the role of the stiffness of breast cancer cells in their detachment from spheroids and migration in 3D collagen matrice. https://doi.org/10.1101/2021.01.21.427639

Indorica, S., Ching, C., Darash, D., Suprenant, M., Emma, B., Heins, Z., Khalil, A. S., & Zaman, M. H. (2021). Computational Model To Quantify the Growth of Antibiotic-Resistant Bacteria in Wastewater. MSystems, 6(3). https://doi.org/10.1128/mSystems.00360-21

Nizamuddin, S., Ching, C., Kamal, R., Zaman, M. H., & Sultan, F. (2021). Continued Outbreak of Ceftriaxone-Resistant Salmonella enterica Serotype Typhi across Pakistan and Assessment of Knowledge and Practices among Healthcare Workers. The American Journal of Tropical Medicine and Hygiene, 104(4), 1265–1270. https://doi.org/10.4269/ajtmh.20-0783

Orubu, E. S. F., Najwa, A., Ching, C., Jawdeh, S. B., Anderson, J., Sheikh, R., Hariri, F., Basaleem, H., & Zaman, M. H. (2021). Assessing antimicrobial resistance, utilization and stewardship in Yemen: An exploratory mixed-methods study (p. 2021.01.27.21250628). medRxiv. https://doi.org/10.1101/2021.01.27.21250628

Orubu, E. S. F., Samad, M. A., Rahman, M. T., Zaman, M. H., & Wirtz, V. J. (2021). Mapping the Antimicrobial Supply Chain in Bangladesh: A Scoping-Review-Based Ecological Assessment Approach. Global Health: Science and Practice, 9(3), 532–547. https://doi.org/10.9745/GHSP-D-20-00502

Outterson, K., Orubu, E. S. F., Rex, J., Årdal, C., & Zaman, M. H. (2021). Patient Access in 14 High-Income Countries to New Antibacterials Approved by the US Food and Drug Administration, European Medicines Agency, Japanese Pharmaceuticals and Medical Devices Agency, or Health Canada, 2010–2020. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America, 74(7), 1183–1190. https://doi.org/10.1093/cid/ciab612

Sutradhar, I., Ching, C., Desai, D., Suprenant, M., Briars, E., Heins, Z., Khalil, A. S., & Zaman, M. H. (2021). Computational Model To Quantify the Growth of Antibiotic-Resistant Bacteria in Wastewater. MSystems, 6(3), e00360-21. https://doi.org/10.1128/mSystems.00360-21

Sutradhar, I., & Zaman, M. H. (2021). Evaluation of the effect of temperature on the stability and antimicrobial activity of rifampicin quinone. Journal of Pharmaceutical and Biomedical Analysis, 197, 113941. https://doi.org/10.1016/j.jpba.2021.113941

Zaman, M. H. (2021). Inclusion and equity through STEM training. Science, 372(6545), 926–926. https://doi.org/10.1126/science.abj1410

Zaman, M. H., & Khanna, T. (2021). The Cost and Evolution of Quality at Cipla Ltd., 1935–2016. Business History Review, 95(2), 249–274. https://doi.org/10.1017/S000768052000077X

Wang, R., Yu, X., Gkousioudi, A., & Zhang, Y. (2021). Effect of Glycation on Interlamellar Bonding of Arterial Elastin. Experimental Mechanics, 61(1), 81–94. https://doi.org/10.1007/s11340-020-00644-y

Wang, R., Yu, X., & Zhang, Y. (2021). Mechanical and Structural Contributions of Elastin and Collagen Fibers to Interlamellar Bonding in the Arterial Wall. Biomechanics and Modeling in Mechanobiology, 20(1), 93–106. https://doi.org/10.1007/s10237-020-01370-z

2020

2019

Mattson JM, Wang Y, Zhang Y. Contributions of Glycosaminoglycans to Collagen Fiber Recruitment in Constitutive Modeling of Arterial Mechanics. Journal of Biomechanics, 2019 Dec;92:1-10. doi: 10.1016/j.jmbbm.2018.12.023. PMID: 30654215. Read

Horenstein R, Lewis CL, Yan S, Halverstadt A, Shefelbine SJ. Validation of MIMUs for measuring hip joint angles. Journal of Biomechanics, 2019 Nov 24;91:170-174. doi: 10.1016/j.jbiomech.2019.05.029. PMID: 31771263. Read

Song J, Michas C, Chen CS, White AE, and Grinstaff MW. From Simple to Architecturally Complex Hydrogel Scaffolds for Cell and Tissue Engineering Applications: Opportunities Presented by Two-photon Polymerization. Advanced Healthcare Materials, 2019 Nov 20; doi:10.1002/adhm.201901217. Read

Li A, Chapuy B, Varelas X, Sebastiani P, Monti S. Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis. Sci Rep, 2019 Nov 15; 9(1):16904. doi: 10.1038/s41598-019-52886-z. PMID: 31729402. Read

Roberts EG, Kleptsyn VF, Roberts GD, Mossburg KJ, Feng B, Domian IJ, Emani SM, Wong JY. Development of a bio-MEMS device for electrical and mechanical conditioning and characterization of cell sheets for myocardial repair. Biotechnol Bioeng. 2019 Nov;116(11):3098-3111. doi: 10.1002/bit.27123. Epub 2019 Aug 6. PMID: 31317531. Read

Bergholt MS, Serio A, Albro MB. Raman imaging: Guiding light for the extracellular matrix. Frontiers in Bioengineering and Biotechnology, 2019 Nov 1;7:303. doi: 10.3389/fbioe.2019.00303. PMID: 31737621. Read

Haak AJ, Kostallari E, Sicard D, Ligresti G, Choi KM, Caporarello N, Jones DL, Tan Q, Meridew J, Diaz Espinosa AM, Aravamudhan A, Maiers JL, Britt RD, Roden AC, Pabelick CM, Prakash YS, Nouraie SM, Li X, Zhang Y, Kass DJ, Lagares D, Tager AM, Varelas X, Shah VH, Tschumperlin DJ. Selective YAP/TAZ inhibition in fibroblasts via dopamine receptor D1 agonism reverses fibrosis. Sci Transl Med. 2019 Oct 30; 11(516). pii: eaau6296. doi: 10.1126/scitranslmed.aau6296. PMID: 31666402. Read

Loverro KL, Hasselquist L, Lewis CL. Females and males use different hip mechanics in response to symmetric military-relevant loads. Journal of Biomechanics, 2019 Oct 11;95:109280. doi: 10.1016/j.jbiomech. 2019.07.024. PMID: 31405526. Epub 2019 Jul 31. Read

Honkanen MKM, Saukko AEA, Turunen, MJ, Xu W, Lovric G, Honkanen JTJ, Grinstaff MW, Lehto VP, Juha Töyräs J. Triple Contrast CT Method Enables Simultaneous Evaluation of Articular Cartilage Composition and Segmentation. Annals of Biomedical Engineering, 2019 Oct 1;48(2), 556-567. doi 10.1007/s10439-019-02362-6. Read

Munn LL, Nia HT. Mechanosensing tensile solid stresses. Proceedings of National Academy of Sciences, 2019 Oct;116(44):21960-21962. doi: 10.1073/pnas.1916115116. Epub 2019 Oct 16. PMID: 31619566. Read

Shi L, Jiang Y, Lan L, Zhang Y, Huang Y, Cheng JX, Yang C. A Fiber Optoacoustic Emitter with Controlled Ultrasound Frequency for Cell Membrane Sonoporation at Submillimeter Spatial Resolution. arxiv.org/abs/1912.00865, Submitted 2019 Oct. Read

Tashkandi M, Ali F, Alsaqer S, Alhousami T, Cano A, Martin A, Salvador F, Portillo F, C Gerstenfeld L, Goldring MB, Bais MV. Lysyl Oxidase-Like 2 Protects against Progressive and Aging Related Knee Joint Osteoarthritis in Mice. Int J Mol Sci, 2019 Sep 27; 20(19). doi: 10.3390/ijms20194798. PMID: 31569601. Read

Sano S, Wang Y, Yura Y, Sano M, Oshima K, Yang Y, Katanasaka Y, Min KD, Matsuura S, Ravid K, Mohi G, Walsh K. JAK2V617F -Mediated Clonal Hematopoiesis Accelerates Pathological Remodeling in Murine Heart Failure. JACC Basic Transl Sci. 2019 Sept 18; 4(6):684-697. doi: 10.1016/j.jacbts.2019.05.013. PMID: 31709318. Read

Khang A, Rodriguez AG, Schroeder ME, Sansom J, Lejeune E, Anseth KS, Sacks MS. Quantifying Heart Valve Interstitial Cell Contractile State Using Highly Tunable Poly (Ethylene Glycol) Hydrogels. Acta Biomater, 2019 Sep 15;96:354-367. doi: 10.1016/j.actbio.2019.07.010. Epub 2019 Jul 16. PMID: 31323351. Read

He Q, Shumate LT, Matthias J, Divieti-Pajevic et al. A G protein-coupled, IP3/protein kinase C pathway controlling the synthesis of phosphaturic hormone FGF23. JCI Insight. 2019 Sept 5;4(17): e125007. doi:10.1172/jci.insight.125007. PMID: 31484825 Read

Yoon C, Choi C, Mirabella T, Howes C, Dong L, King J, Yang J, Oberai A, Eyckmans J, Chen, CS. Myosin IIA–mediated forces regulate multicellular integrity during vascular sprouting. Molecular Biology of the Cell, 2019 Jul 1;30(16), 1974-1984. PMID: 31318321. Read

Lejeune E, Sacks MS. Analyzing valve interstitial cell mechanics and geometry with spatial statistics. Journal of Biomechanics, 2019 Jul;93, 159-166. doi: 10.1016/j.jbiomech.2019.06.028. PMID: 31383360. Read

Hoffmann GA, Wong JY, Smith ML. On Force and Form: Mechano-Biochemical Regulation of Extracellular Matrix. Biochemistry, 2019 May 30;58,47, 4710-4720. doi: 10.1021/acs.biochem.9b00219. PMID: 31144496. Read

Polacheck WJ, Kutys ML, Tefft J, Chen, CS. Microfabricated blood vessels for modeling the vascular transport barrier. Nature Protocols, 2019 May;14(5), 1425. doi: 10.1038/s41596-019-0144-8. Epub 2019 Apr 5. PMID: 30953042. Read

Graber TG, Fandrey KR, Thompson LV. Novel individualized power training protocol preserves physical function in adult and older mice. Geroscience. 2019, Apr;41(2):165-183. doi: 10.1007/s11357-019-00069-z. Epub 2019 May 10. PMID: 31076998. Read

Nia HT, LL, Jain RK. Mapping physical tumor microenvironment and drug delivery. Clinical Cancer Research, 2019 Apr;25:2024-2026 . doi: 10.1158/1078-0432.CCR-18-3724. Read

Li H, Mattson JM & Zhang Y. Integrating structural heterogeneity, fiber orientation, and recruitment in multiscale ECM mechanics. Journal of the mechanical behavior of biomedical materials, 2019 Apr;92,1-10. doi: 10.1016/j.jmbbm.2018.12.023. Epub 2018 Dec 21. Read

Liu H, Thompson LV. Skeletal muscle denervation investigations: Selecting an experimental control wisely. Am J Physiol Cell Physiol. 2019 Mar 1;316(3):C456-C461. doi: 10.1152/ajpcell.00441.2018. Epub 2019 Jan 9. PMID: 30624984. Read

Lejeune E, Dortdivanlioglu B, Kuhl E, Linder C. Understanding the mechanical link between oriented cell division and cerebellar morphogenesis. Soft matter, 2019 Mar 6;15(10), 2204-2215. doi: 10.1039/c8sm02231c. PMID: 30758032. Read

Bais MV. Impact of Epigenetic Regulation on Head and Neck Squamous Cell Carcinoma. J Dent Res, 2019 Mar; 98(3):268-276. doi: 10.1177/0022034518816947. Epub 2019 Jan 7. PMID: 30615537. Read

Lee MJ, Pickering RT, Shibad V, Wu Y, Karastergiou K, Jager M, Layne MD, Fried SK. Impaired Glucocorticoid Suppression of TGFß Signaling in Human Omental Adipose Tissues Limits Adipogenesis and May Promote Fibrosis. Diabetes, 2019 Mar;68(3):587-597. doi: 10.2337/db18-0955. Epub 2018 Dec 7. PMID: 30530781. Read

Warner MB, Wilson DA, Herrington L, Dixon S, Power C, Jones R, Heller MO, Carden P, Lewis CL. A systematic review of the discriminating biomechanical parameters during the single leg squat. Physical Therapy in Sport, 2019 Mar;36:78-91. doi: 10.1016/j.ptsp.2019.01.007. PMID: 30703642. Read

Sellon B, Azadi M, Oftadeh R, Nia HT, Ghaffari R, Grodzinsky AJ, Freeman DM. Nanoscale Poroelasticity of the Tectorial Membrane Determines Hair Bundle Deflections. Physical Review Letters, 2019 Jan 16;122(2):028101. doi: 10.1103/PhysRevLett.122.028101. PMID: 30720330. Read

2018

Bose P, Eyckmans J, Nguyen TD, Chen CS, Reich DH. The Effects of Geometry on the Mechanics and Alignment of 3D Engineered Microtissues. ACS Biomaterials Science & Engineering, 2018 Dec 7;5(8), 3843-3855. doi:10.1021/acsbiomaterials.8b01183. Read

Kaiser JM, Allaire B, Fein PM, Lu D, Jarraya M, Guermazi A, Demissie S, Samelson EJ, Bouxsein ML, Morgan EF. Correspondence between bone mineral density and intervertebral disc degeneration across age and sex. Archives of Osteoporosis, 2018 Nov 12; 13(1):123. doi: 10.1007/s11657-018-0538-1. PMID: 30421154. Read

Durney KM, Sharifi Kia D, Wang T, Singh A, Karbowski L, Koo HJ, Ateshian GA, Albro MB. Physiologic medium maintains the homeostasis of immature bovine articular cartilage explants in long-term culture. Journal of Biomechanical Engineering, 2018 Nov 1;141. doi: 10.1115/1.4041901. PMID: 30383167. Read

Yu X, Turcotte R, and Zhang Y. Micromechanics of elastic lamellae – Unraveling the role of structural inhomogeneity in multi-scale tissue mechanics. Journal of the Royal Society Interface, 2018 Oct 17;15(147), 20180492. doi: 10.1098/rsif.2018.0492. PMID: 30333250. Read

Connizzo BK, Grodzinsky AJ. Release of Pro-Inflammatory Cytokines from Muscle and Bone Causes Tenocyte Death in a Novel Rotator Cuff In Vitro Explant Culture Model. Connective Tissue Research, 2018 Sep;59(5):423-436. doi: 10.1080/03008207.2018.1439486. Epub 2018 Jun 6. PMID 29447021. Read

Bou Jawde S, Scheuermann A, Bartolák-Suki E, Suki B. The effect of mechanical or electrical stimulation on apnea length in mice. Biomedical Engineering Letters, 2018 Aug;8(3), 329–335. doi:10.1007/s13534-018-0076-1. PMID: 30603217. Read

Kartha VK, Alamoud KA, Sadykov K, Nguyen BC, Laroche F, Feng H, Lee J, Pai SI, Varelas X, Egloff AM, Snyder-Cappione JE, Belkina AC, Bais MV, Monti S, Kukuruzinska MA. Functional and genomic analyses reveal therapeutic potential of targeting ß-catenin/CBP activity in head and neck cancer. Genome Med, 2018 Jul 20;10(1):54. doi: 10.1186/s13073-018-0569-7. PMID: 30029671. Read

Nicholson CJ, Singh K, Saphirstein RJ, Gao YZ, Li Q, Chiu JG, Leavis P, Verwoert GC, Mitchell GF; AortaGen Consortium, Porter T, Morgan KG. Reversal of Aging-Induced Increases in Aortic Stiffness by Targeting Cytoskeletal Protein-Protein Interfaces. J Am Heart Assoc. 2018 Jul 18;7(15). pii: e008926. doi: 10.1161/JAHA.118.008926. PMID: 30021807. Read

Baumann CW, Kwak D, Ferrington DA, Thompson LV. Downhill exercise alters immunoproteasome content in mouse skeletal muscle. Cell Stress and Chaperones, 2018 Jul;23(4):507-517. doi: 10.1007/s12192-017-0857-y. Epub 2017 Nov 9. PMID: 29124664. Read

Lejeune E, Linder C. Modeling mechanical inhomogeneities in small populations of proliferating monolayers and spheroids. Biomechanics and modeling in mechanobiology, 2018 Jun;17(3), 727-743. doi: 10.1007/s10237-017-0989-0. Read

Jager M, Lee MJ, Li C, Farmer SR, Fried SK, Layne MD. Aortic carboxypeptidase-like protein enhances adipose tissue stromal progenitor differentiation into myofibroblasts and is upregulated in fibrotic white adipose tissue. PLoS One. 2018 May 25;13(5). doi: 10.1371/journal.pone.0197777. eCollection 2018. PMID: 29799877. Read

Lejeune E, Linder C. Understanding the relationship between cell death and tissue shrinkage via a stochastic agent-based model. Journal of biomechanics, 2018 May 17;73:9-17. doi: 10.1016/j.jbiomech.2018.03.019. Epub 2018 Mar 17. PMID: 29622482. Read

Kumar D, Wyatt C, Lee S, Okazaki N, Chiba K, Link TM, Souza RB, Majumdar S. Sagittal plane walking patterns are related to MRI changes over 18-months in people with and without mild-moderate hip osteoarthritis. J Orthop Res. 2018 May;36(5):1472-1477. doi: 10.1002/jor.23763. PMID: 29044677. Read

Blackburn PR, Xu Z, Tumelty KE, Zhao RW, Monis WJ, Harris KG, Gass JM, Cousin MA, Boczek NJ, Mitkov MV, Cappel MA, Francomano CA, Parisi JE, Klee EW, Faqeih E, Alkuraya FS, Layne MD, McDonnell NB, Atwal PS. Bi-allelic Alterations in AEBP1 Lead to Defective Collagen Assembly and Connective Tissue Structure Resulting in a Variant of Ehlers-Danlos Syndrome. Am J Hum Genet, 2018 Apr 05;102(4):696-705. doi: 10.1016/j.ajhg.2018.02.018. Epub 2018 Mar 29. PMID: 29606302. Read

Oftadeh R, Connizzo BK, Nia HT, Ortiz C, Grodzinsky AJ. Biological connective tissues exhibit viscoelastic and poroelastic behavior at different frequency regimes: application to tendon and skin biophysics. Acta Biomaterialia. 2018 Apr 1;70:249-259. doi: 10.1016/j.actbio.2018.01.041. Epub 2018 Feb 7. PMID: 29425716. Read

Kim JE, Reynolds DS, Zaman MH, Mak M. Characterization of the mechanical properties of cancer cells in 3D matrices in response to collagen concentration and cytoskeletal inhibitors. Integrative Biology, 2018 Apr;10, 232–241. doi: 10.1039/c8ib00044a. PMID: 29620778. Read

Cooke, ME, Hussein, AI, Lybrand, KE, Wulff, A, Simmons, E, Choi, JH, Litrenta, J, Ricci, WM, Nascone, JW, O’Toole, RV, Morgan, EF, Gerstenfeld, LC. Correlation between RUST assessments of fracture healing to structural and biomechanical properties. Journal of Orthopedic Research. 2018 Mar;36(3):945-53. doi: 10.1002/jor.23710. Epub 2017 Sep 20. PMID: 28833572. Read

Leiva O, Leon C, Kah Ng S, Mangin P, Gachet C, Ravid K. The role of extracellular matrix stiffness in megakaryocyte and platelet development and function. Am J Hematol. 2018 Mar; 93(3):430-441. doi: 10.1002/ajh.25008. Epub 2018 Jan 12. PMID: 29247535. Read

Kohn JC, Azar J, Seta F, Reinhart-King CA. High-Fat, High-Sugar Diet-Induced Subendothelial Matrix Stiffening is Mitigated by Exercise. Cardiovasc Eng Technol. 2018 Mar;9(1):84-93. doi: 10.1007/s13239-017-0335-9. Epub 2017 Nov 20. PMID: 29159794. Read

Huang Y, Jiang Y, Wu O, An X, Chubykin AA, Cheng J-X, Xu X-M, Yang C. Nanoladders Facilitate Directional Axonal Outgrowth and Regeneration. ACS Biomaterials Science and Engineering, 2018 Feb 17;4(3), 1037-1045. DOI: 10.1021/acsbiomaterials.7b0098. Read

Albro MB, Bergholt MS, St-Pierre JP, Vinals Guitart A, Zlotnick H, Stevens MM. (2018) Hyperspectral Raman imaging as a novel tool for quantifying the distribution of biochemical constituents in native and engineered cartilage. NPJ Regenerative Medicine, 2018 Feb 9;3:3. doi: 10.1038/s41536-018-0042-7. PMID: 29449966. Read

Hussein AI, Louzeiro DT, Unnikrishnan GU, Morgan EF. Differences in Trabecular Microarchitecture and Simplified Boundary Conditions Limit the Accuracy of Quantitative Computed Tomography-Based Finite Element Models of Vertebral Failure. Journal of Biomechanical Engineering, 2018 Feb 1;140(2). doi: 10.1115/1.4038609. PMID: 29196764. Read