NPC Publications for 2018

Congratulations to all our trainees that were published this year!

We do our best to capture all the publications, but please always feel free to email publications to include in the next newsletter to Elisa. We also encourage you to tweet your publications using the hashtag #buneuropho and also tag @BU_NPC and we will retweet it to the larger community.

Here’s a comprehensive list of our NPC trainees achievements:

Grad Students

Kyle Hansen:

  • Shen SP, Tseng HA, Hansen KR, Wu R, Gritton HJ, Si J, Han X. Automatic Cell Segmentation by Adaptive Thresholding (ACSAT) for Large-Scale Calcium Imaging Datasets. eNeuro. 2018 Sep 13;5(5). pii: ENEURO.0056-18.2018. doi:10.1523/ENEURO.0056-18.2018. eCollection 2018 Sep-Oct. PubMed PMID: 30221189;
  • Hansen KR, DeWalt GJ, Mohammed AI, Tseng HA, Abdulkerim ME, Bensussen S, Saligrama V, Nazer B, Eldred WD, Han X. Mild Blast Injury Produces Acute Changes in Basal Intracellular Calcium Levels and Activity Patterns in Mouse Hippocampal Neurons. J Neurotrauma. 2018 Jul 1;35(13):1523-1536. doi: 10.1089/neu.2017.5029. Epub 2018 Apr 10. PubMed PMID: 29343209; PubMed Central PMCID: PMC5998839.

Nathaniel Kinsky and William Mau:

  • Kinsky NR, Sullivan DW, Mau W, Hasselmo ME, Eichenbaum HB. Hippocampal Place Fields Maintain a Coherent and Flexible Map across Long Timescales. Curr Biol. 2018 Nov 19;28(22):3578-3588.e6. doi: 10.1016/j.cub.2018.09.037. Epub 2018 Nov 1. PubMed PMID: 30393037.
  • Mau W, Sullivan DW, Kinsky NR, Hasselmo ME, Howard MW, Eichenbaum H. The Same Hippocampal CA1 Population Simultaneously Codes Temporal Information over Multiple Timescales. Curr Biol. 2018 May 21;28(10):1499-1508.e4. doi:10.1016/j.cub.2018.03.051. Epub 2018 Apr 26. PubMed PMID: 29706516; PubMed Central PMCID: PMC5964012.

Nathan Perkins:

  • Nathan Perkins L, Semu D, Shen J, Boas DA, Gardner TJ. High-density microfibers as a potential optical interface to reach deep brain regions. J Neural Eng. 2018 Dec;15(6):066002. doi: 10.1088/1741-2552/aadbb2. Epub 2018 Aug 21. PubMed PMID: 30127101; PubMed Central PMCID: PMC6239906.

Bahar Rahsepar:

  • Fernandez FR, Rahsepar B, White JA. Differences in the Electrophysiological Properties of Mouse Somatosensory Layer 2/3 Neurons In Vivo and Slice Stem from Intrinsic Sources Rather than a Network-Generated High Conductance State. eNeuro. 2018 Apr 13;5(2). pii: ENEURO.0447-17.2018. doi: 10.1523/ENEURO.0447-17.2018. eCollection 2018 Mar-Apr. PubMed PMID: 29662946; PubMed Central PMCID: PMC5898699.

Nicholas Vikers:

  • Shain WJ, Vickers NA, Li J, Han X, Bifano T, Mertz J. Axial localization with modulated-illumination extended-depth-of-field microscopy. Biomed Opt Express. 2018 Mar 21;9(4):1771-1782. doi: 10.1364/BOE.9.001771. eCollection 2018 Apr 1. PubMed PMID: 29675318; PubMed Central PMCID: PMC5905922.

Tim Weber:

  • Weber TD, Mertz J. Non-mydriatic chorioretinal imaging in a transmission geometry and application to retinal oximetry. Biomed Opt Express. 2018 Jul 25;9(8):3867-3882. doi: 10.1364/BOE.9.003867. eCollection 2018 Aug 1. PubMed PMID: 30338161; PubMed Central PMCID: PMC6191618.

Post doctoral fellows

Andrew Alexander:

  • A. S. Alexander and M. E. Hasselmo, “Navigation: Shedding light on stellate cells,” Elife, vol. 7, p. e41041, 2018.
  • J. R. Hinman, H. Dannenberg, A. Alexander, and M. E. Hasselmo, “Neural mechanisms of navigation involving interactions of cortical and subcortical structures,” J. Neurophysiol., 2018.

Amaury Badon:

  • A. Badon, S. Bensussen, H. J. Gritton, M. R. Awal, C. V Gabel, X. Han, and J. Mertz, “Video-rate large-scale imaging with Multi-Z confocal microscopy,” arXiv Prepr. arXiv1811.07045, 2018.

Xiaojun Cheng:

  • X. Cheng, D. Tamborini, S. A. Carp, O. Shatrovoy, B. Zimmerman, D. Tyulmankov, A. Siegel, M. Blackwell, M. A. Franceschini, and D. A. Boas, “Time domain diffuse correlation spectroscopy: modeling the effects of laser coherence length and instrument response function,” Opt. Lett., vol. 43, no. 12, pp. 2756–2759, 2018.
  • D. Tamborini, S. Carp, X. Cheng, B. Zimmermann, C. Evans, O. Shatrovoy, A. Siegel, E. Duerr, M. Blackwell, and D. Boas, “Review of time-Domain Diffuse Correlation Spectroscopy: from theory to human subject studies,” in Optical Tomography and Spectroscopy, 2018, p. JTu3A–53.

Yarden Cohen:

  • F. Deku, Y. Cohen, A. Joshi-Imre, A. Kanneganti, T. J. Gardner, and S. F. Cogan, “Amorphous silicon carbide ultramicroelectrode arrays for neural stimulation and recording,” J. Neural Eng., vol. 15, no. 1, p. 16007, 2018.
  • F. Deku, C. Frewin, A. Stiller, Y. Cohen, S. Aqeel, A. Joshi-Imre, B. Black, T. Gardner, J. Pancrazio, and S. Cogan, “Amorphous Silicon Carbide Platform for Next Generation Penetrating Neural Interface Designs,” Micromachines, vol. 9, no. 10, p. 480, 2018.

Holger Dannenberg:

  • J. R. Hinman, H. Dannenberg, A. Alexander, and M. E. Hasselmo, “Neural mechanisms of navigation involving interactions of cortical and subcortical structures,” J. Neurophysiol., 2018.

Evren Erdener:

  • J. Tang, S. E. Erdener, B. Fu, and D. A. Boas, “Capillary red blood cell velocimetry by phase-resolved optical coherence tomography,” in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXII, 2018, vol. 10483, p. 104832W.
  • J. Tang, S. E. Erdener, B. Li, B. Fu, S. Sakadzic, S. A. Carp, J. Lee, and D. A. Boas, “Measurement of shear-induced diffusion of red blood cells using dynamic light scattering-optical coherence tomography,” in Neural Imaging and Sensing 2018, 2018, vol. 10481, p. 104811N.
  • J. Tang, S. E. Erdener, B. Li, B. Fu, S. Sakadzic, S. A. Carp, J. Lee, and D. A. Boas, “Shear‐induced diffusion of red blood cells measured with dynamic light scattering‐optical coherence tomography,” J. Biophotonics, vol. 11, no. 2, p. e201700070, 2018.
  • D. D. Postnov, S. E. Erdener, K. Kilic, and D. A. Boas, “Cardiac pulsatility mapping and vessel type identification using laser speckle contrast imaging,” Biomed. Opt. Express, vol. 9, no. 12, pp. 6388–6397, 2018.

James Hinman:

  • J. R. Hinman, H. Dannenberg, A. Alexander, and M. E. Hasselmo, “Neural mechanisms of navigation involving interactions of cortical and subcortical structures,” J. Neurophysiol., 2018.

Dmitry Postnov:

  • D. D. Postnov, S. E. Erdener, K. Kilic, and D. A. Boas, “Cardiac pulsatility mapping and vessel type identification using laser speckle contrast imaging,” Biomed. Opt. Express, vol. 9, no. 12, pp. 6388–6397, 2018.

Jianbo Tang:

  • J. Tang, S. E. Erdener, B. Fu, and D. A. Boas, “Capillary red blood cell velocimetry by phase-resolved optical coherence tomography,” in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXII, 2018, vol. 10483, p. 104832W.
  • J. Tang, S. E. Erdener, B. Li, B. Fu, S. Sakadzic, S. A. Carp, J. Lee, and D. A. Boas, “Measurement of shear-induced diffusion of red blood cells using dynamic light scattering-optical coherence tomography,” in Neural Imaging and Sensing 2018, 2018, vol. 10481, p. 104811N.
  • J. Tang, S. E. Erdener, B. Li, B. Fu, S. Sakadzic, S. A. Carp, J. Lee, and D. A. Boas, “Shear‐induced diffusion of red blood cells measured with dynamic light scattering‐optical coherence tomography,” J. Biophotonics, vol. 11, no. 2, p. e201700070, 2018.

Bernhard Zimmerman:

  • B. Deng, B. B. Zimmermann, B. Singh, Q. Fang, J. Cormier, R. Moore, D. B. Kopans, M. Saksena, D. A. Boas, and S. A. Carp, “Multimodal Breast Cancer Imaging Using Coregistered Dynamic DOT and Digital Breast Tomosynthesis,” in Optical Tomography and Spectroscopy, 2018, p. OF4D–4.
  • P. Farzam, D. Tamborini, B. B. Zimmermann, K. C. Wu, D. Boas, and M. Franceschini, “Novel Diffuse Correlation Spectroscopy for Simulations Estimation of Hemoglobin Concentration, Oxygen Saturation, and Blood Flow,” in Optical Tomography and Spectroscopy, 2018, p. JTh3A–33.
  • D. Tamborini, S. Carp, X. Cheng, B. Zimmermann, C. Evans, O. Shatrovoy, A. Siegel, E. Duerr, M. Blackwell, and D. Boas, “Review of time-Domain Diffuse Correlation Spectroscopy: from theory to human subject studies,” in Optical Tomography and Spectroscopy, 2018, p. JTu3A–53.
  • X. Cheng, D. Tamborini, S. A. Carp, O. Shatrovoy, B. Zimmerman, D. Tyulmankov, A. Siegel, M. Blackwell, M. A. Franceschini, and D. A. Boas, “Time domain diffuse correlation spectroscopy: modeling the effects of laser coherence length and instrument response function,” Opt. Lett., vol. 43, no. 12, pp. 2756–2759, 2018.

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