Graduate Prerequisites: (CASPY212) EK 125 or equivalent Matlab; PY 212 or equivalent knowledge of light a nd waves. Suggested: EC 562, EC 555 - This introductory graduate-level course aims to teach students how electromagnetic waves and various forms of molecular spectroscopy can be used to study a complex biological system by pushing the physical limits on engineering system design.The course will cover fundamental concepts of optical spectroscopy and microscopy, followed by specific topics covering fluorescence-based , absorption-based, and scattering-based spectroscopic imaging. In addition, this course will provide in-depth discussions of linear and nonlinear spectroscopic imaging in the aspects of theory, instrumentation, image data analysis and enabling applications. Students will learn how to give a concise and informative presentation of a recent literature to the class. Students will be able to challenge their creativity in designing advanced imaging instrument of data analysis methods as part of their course assignments. The students will learn how to write and present a convincing proposal for the required final project to be designed by interdisciplinary teams formed among the students. Same as ENG BE 556. Students may not receive credit for both.

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