Training Grant in Bioinformatics & Computational Biology
Since the start, the Bioinformatics Program has maintained an affiliation with the National Institutes of Health. This association has included the Graduate Partnership Program (BU-NIH GPP), substantial funding through faculty research grants, individual predoctoral (F31) training grants, and training grants through the National Institute of General Medical Sciences (NIGMS).
The Program currently receives funding from the NIH Institutional Training Grant in Bioinformatics and Computational Biology (T32GM100842). This grant provides first-year fellowships to prepare PhD students for careers in the molecular life sciences who will support the advances now underway in modern medicine. These scholarships are awarded at the time of admission and do not require a separate application. These awards are made to students who have a record of outstanding academic ability and who have demonstrated enthusiasm and knowledge in the field of Bioinformatics.
Get to know our T32 Trainees
Kathryn Atherton, PhD Candidate
Enrolled: 2019
Home State: Illinois
B.S. Biological Engineering
Katie is working in the Bhatnagar Lab, on investigating how the soil microbiome varies along an urban-to-rural gradient to impact tree health.
Sarah Bald
Enrolled: 2022
Home State: California
B.S. Computational and Systems Biology
Elizabeth Becker, PhD
Enrolled: 2015 – 2020
Home State: New Jersey
B.S. Biology
Faculty Co-Mentors: Katrina Steiling and Avrum Spira
Thesis: Derivation of Airway Epithelium Transcriptomic Signatures of COPD Phenotypes
Nathaniel Borders
Enrolled: 2020
Home State: Delaware
B.S. Biology
Nate is working in the Khalil Lab, on Protease evolution.
Emma Briars, PhD
Enrolled: 2016 – 2021
Home State: Illinois
B.S. Biochemistry & Molecular Biology; B.S. Mathematics
Faculty Mentor: Mo Khalil
Thesis: Development of Methods to Diagnose and Predict Antibiotic Resistance Using Synthetic Biology and Computational Approaches
Demarcus Briers, PhD
Enrolled: 2014 – 2018
Home State: Texas
B.S. Biology; Minors in Chemistry and Spanish
Faculty Mentor: Calin Belta
Thesis: Modeling, quantification, and synthesis of patterns in networks of locally interacting cells
Andrew Chen
Enrolled: 2021
Home Country: Hong Kong
B.A. Statistics
Andrew in working in the Monti Lab, on Scalable and Interpretable Methods for Multi-omics Network Analysis.
Aaron Chevalier, PhD
Enrolled: 2017 – 2022
Home Sate: Massachusetts
B.S. Physics, Minor Computer Science
Faculty Mentor: Josh Campbell
Thesis: Tools for Mutational Signature Discovery and Methods for Prediction of Drug Response

Demetrius Dimucci, PhD
Enrolled: 2014 – 2019
Home State: California
B.S. Molecular Biology; M.S. Bioinformatics
Faculty Mentor: Daniel Segrè
Thesis: Machine Learning Applications for Synthetic Microbial Ecology: Predicting Interactions and Identifying Their Putative Mechanisms
Natasha Gurevich
Enrolled: 2021
Home State: New York
B.S. Quantitative Biology
William Hackett
Enrolled: 2016
Home State: New York
B.S. Biomedical Engineering and Applied Mathematics & Statistics
Will is working in the Zaia Lab, on Quantitation and Quality Metrics in Glycoproteomics.
Dakota Hawkins
Enrolled: 2016
Home State: Utah
B.S. Biology + Mathematics
Dakota is working in the Bradham Lab, on using single cell RNA sequencing and imagining data to understand genomic mechanisms of pattern formation during sea urchin development.
Tanya Karagiannis, PhD
Enrolled: 2017 – 2021
Home State: Massachusetts
B.S. Biology; B.S. Mathematics
Faculty Co-Mentors: Stefano Monti and Paola Sebastiani
Thesis: Bronchial Gene Expression Associated with Airway Pre-Malignancy and Lung Cancer Subtypes
Dan Lancour, PhD
Enrolled: 2013 – 2019
Home State: Wisconsin
B.S. Computer Science; B.S. Genetics
Faculty Co-Mentors: Lindsay Farrer and Simon Kasif
Thesis: Integrative Multi-Omic Network Strategies for Unraveling Complex Disease Biology and the Identification of Novel Phenotype Associated Genes
Hannah Lords
Enrolled: 2021
Home State: Idaho
B.S. Genetics
Hannah is working in the Sebastiani Lab, on integrating multi-omic analyses of cognitive function and longevity.
Justin Moy
Enrolled: 2022
Home State: Massachusetts
BS/MS Bioinformatics and Computational Biology
Devlin Moyer
Enrolled: 2019
Home State: Georgia
B.S. Biochemistry
Devlin is working on creating context-specific simulations of tumor metabolism. His faculty co-mentors are Juan Fuxman Bass, and Daniel Segrè.
Mary Rachel Nalehua
Enrolled: 2019
Home State: Texas
B.S. Computer Science
Mary Rachel is working in the Zaia Lab, creating bioinformatics tools for the study of glycopeptides from LC-IMS-MS/MS data.
Katherine Norwood, PhD
Enrolled: 2014 – 2020
Home State: Maryland
B.S. Biochemistry, Molecular & Cell Biology; B.S. mathematics
Faculty Mentor: Tom Kepler
Thesis: Statistical Methods & Algorithms for Autonomous Immunoglobulin Repertoire Analysis
Aubrey Odom
Enrolled: 2020
Home State: California
B.S. Statistics, emph. Statistical Science; M.S. Statistics
Aubrey is working in the Johnson Lab, on microbiomics for various chronic airway diseases and software for aggregation and analysis of TB gene signatures.
Oluwatosin Olayinka
Enrolled: 2020
Home State: North Carolina
B.S. Biology
Tosin is working in the Farrer Lab, on functional transcriptional changes associated with Alzheimer’s disease.
Alan Pacheco, PhD
Enrolled: 2015 – 2020
Home State: California
B.S. Biomedical Engineering
Faculty Mentor: Daniel Segrè
Thesis: Environmental Modulation of Microbial Ecosystems
Devanshi Patel, PhD
Enrolled: 2015 – 2020
Home State: Connecticut
B.S. Biopsychology; M.S. Bioinformatics
Faculty Mentor: Lindsay Farrer
Thesis: Tissue-Dependent Analysis of Common and Rare Genetic Variants for Alzheimer’s Disease Using Multi-Omics Data
Jillian Petrosky
Enrolled: 2022
Home State: North Carolina
B.S. Systems Biology with minors in Computer Science and Bioethics
Elmutaz M. Shaikho, PhD
Enrolled: 2014 – 2018
Home Country: Khartoum
B.S. Pharmacy; M.S. Bioinformatics
Faculty Co-Mentors: Paola Sebastiani and Martin Steinburg
Thesis: Investigating cis- and trans-acting elements involved in regulating fetal hemoglobin gene expression using high throughput genetic data
Michael Silverstein
Enrolled: 2020
Home state: Massachusetts
B.S. Biomedical Engineering
M.S. Biomedical Engineering
Michael is working in the Segrè Lab, on Soil Microbiome.
Marlene Tejeda
Enrolled: 2019
Home State: Massachusetts
B.S. Biology
Marlene is working in the Farrer Lab, on investigating the role of microorganisms detected in human DNA in Alzheimer’s Disease.
Jacquelyn Turcinovic
Enrolled: 2018
Home State: Texas
B.S. Bioinformatics
Jackie is working in the Connor Lab, on using viral genomics to track SARS-CoV-2 outbreaks.
Christian Wake, PhD
Enrolled: 2013 – 2018
Home State: Arizona
B.S. Biological Science; B.S. Computational Mathematical Science
Faculty Co-Mentors: Rick Myers and Anita Destefano
Thesis: RNA sequencing differential expression and small RNA analysis of obesity and BMI with post-mortem human brain
Zachary Wakefield
Enrolled: 2021
Home State: New York
B.A. Genomics and Computational Biology
Zach is working in the Fiszbein Lab, investigating the impact of RNA processing and alternative splicing events in cancer.
NIH Training Faculty Mentors
Name | Department / School | Research Area |
Allen, Karen | Professor, Department of Chemistry | Biochemistry, Cell Biology and Molecular Biology / Genetics and Genomics |
Belta, Calin | Professor, Systems Engineering / Mechanical Engineering / College of Engineering | Systems Biology – Synthetic Biology |
Benson, Gary | Associate Professor, Computer Science / Biology / College of Arts & Sciences | Databases and Computing / Genetics and Genomics |
Bhatnagar, Jennifer | Assistant Professor, Biology / College of Arts & Sciences | Biochemistry, Cell Biology and Molecular Biology / Genetics and Genomics |
Bradham, Cynthia | Assistant Professor, Biology / College of Arts & Sciences | Genetics and Genomics |
Carvalho, Luis | Associate Professor, Mathematics & Statistics / College of Arts & Sciences | Databases and Computing / Statistics and Machine Learning |
Connor, John | Associate Professor, Microbiology / School of Medicine | Biochemistry, Cell Biology and Molecular Biology |
Densmore, Douglas | Associate Professor, Electrical & Computer Engineering / College of Engineering | Databases and Computing / Systems Biology – Synthetic Biology |
Dunlop, Mary | Assistant Professor, Biomedical Engineering / College of Engineering | Systems Biology – Synthetic Biology / Genetics and Genomics |
Emili, Andrew | Professor, Biology / Biochemistry / College of Arts & Sciences | Genetics and Genomics |
Fuxman Bass, Juan | Assistant Professor, Biology / College of Arts & Sciences | Genetics and Genomics / Systems Biology – Synthetic Biology |
Galagan, James | Associate Professor, Biomedical Engineering / College of Engineering | Systems Biology – Synthetic Biology |
Johnson, W. Evan | Associate Professor of Medicine, Division of Computational Biomedicine / Boston University School of Medicine | Genetics / Genomics and Statistics / Machine Learning |
Kepler, Thomas | Professor, Microbiology / School of Medicine | Genetics and Genomics / Systems Biology – Synthetic Biology |
Khalil, Ahmad ‘Mo’ | Assistant Professor / Biomedical Engineering / College of Engineering | Systems Biology – Synthetic Biology |
Korolev, Kirill | Assistant Professor, Physics / College of Arts & Sciences | Systems Biology – Synthetic Biology |
Lenburg, Marc | Professor, Computational Biomedicine / School of Medicine | Genetics and Genomics |
Mehta, Pankaj | Associate Professor, Physics / College of Arts & Sciences | Systems Biology – Synthetic Biology |
Monti, Stefano | Associate Professor, Dept. of Medicine / School of Medicine | Computational Biology and Genomics |
Myers, Richard | Professor, Neurology / School of Medicine | Genetics and Genomics |
Sebastiani, Paola | Professor, Biostatistics / School of Public Health | Genetics and Genomics / Statistics and Machine Learning |
Segrè, Daniel | Professor, Biology / College of Arts & Sciences | Biochemistry, Cell Biology and Molecular Biology / Genetics and Genomics / Systems Biology – Synthetic Biology |
Siggers, Trevor | Assistant Professor, Biology / College of Arts & Sciences | Biochemistry, Cell Biology and Molecular Biology / Genetics and Genomics / Structural Biology and Biophysics / Systems Biology – Synthetic Biology |
Spira, Avrum | Professor of Medicine / Pulmonary Medicine / School of Medicine / Director, Translational Bioinformatics Program, Clinical and Translational Science Institute, Boston University | Genetics and Genomics / Systems Biology – Synthetic Biology |
Tullius, Thomas | Director, Bioinformatics Graduate Program / Professor, Chemistry / College of Arts & Sciences | Genetics and Genomics / Structural Biology and Biophysics |
Vajda, Sandor | Professor, Biomedical Engineering / College of Engineering | Structural Biology and Biophysics |
Waxman, David | Professor, Biology / College of Arts & Sciences | Genetics and Genomics |
Zaia, Joseph | Professor, Biochemistry / School of Medicine | Systems Biology – Synthetic Biology |
T32 Trainee Outcomes
Under Construction