Skip to Main Content
Boston University
  • Bostonia
  • BU Today
  • The Brink
  • University Publications

    • Bostonia
    • BU Today
    • The Brink
  • School & College Publications

    • The Record
Other Publications
BU Today
  • Sections
News, Opinion, Community

MED launches trailblazing genomics database

Unprecedented sharing of data seeks new cures

October 5, 2006
  • Chris Berdik
Twitter Facebook
Marc Lenburg helped pave the way to increased data sharing.

A new School of Medicine Web site that could establish a precedent for open and collaborative genetics research may also help researchers find genetic links to many common ailments, such as high cholesterol and high blood pressure.

The Genomic Medicine Database (GMED), launched last month by researchers at the MED department of genetics and genomics, is a searchable collection of prepublication results from the BU researchers’ genetic analysis of 320 families from the Framingham Heart Study. The study, conducted by the National Heart, Lung, and Blood Institute (NHLBI) initiative, has tracked the health of families in Framingham, Mass. since 1948, and has been overseen by BU since 1971.  

Work began on the database in 2005, when geneticists scanned blood samples from 1,320 individuals for 100,000 genetic markers, known as single nucleotide polymorphisms (SNPs), and then looked for correlations between those genetic differences and about 10 medical conditions.  

“This allowed us to find sites of variation where having one flavor or another of these SNPs may indicate a predisposition to a certain disease,” says Marc Lenburg, a MED research assistant professor of genetics and genomics and director of bioinformation technology. Lenburg and fellow researchers, led by department chair Michael Christman, published an article in Science this past April about their study’s first significant finding: a genetic variant that may predispose 10 percent of people with European or African ancestry to obesity.

Scientific discoveries are validated when they are independently replicated by other researchers. While the genetic link with obesity had been replicated in tests of different populations — in Germany, in Chicago, and at Boston’s Children’s Hospital — the correlations between genetic variants and the remaining medical conditions found by the BU researchers have yet to be verified by other genomic studies, a fact that spurred Lenburg and his colleagues to make these “candidate associations” public as soon as possible. They believe that freely sharing their results will speed replication of the genetic associations, says Alan Herbert, a MED assistant professor of genetics and genomics. And replication, Herbert adds, “is a necessary step to developing drugs and diagnostics.”

This kind of open sharing is not the norm in cutting-edge genetics research because scientists often build their careers on published research and discoveries they can claim as their own. Indeed, this spring, the World Health Organization was accused of putting scientific prestige above the best interest of world public health by keeping the newly discovered genetic sequence of the mutating bird flu virus in a password-protected database, open only to researchers who had contributed data. (See related article.)

But the BU geneticists believe intellectual property concerns should yield to the increased speed of discovery that collaboration could bring. Hence the creation of GMED, where a visiting scientist can type a medical condition, such as cholesterol, into the “Phenotype Browser” to see all the possible associated genes, or begin with a particular gene and bring up the traits correlated with it using the “Genome Browser.”  

So far, according to the creators, the database has attracted about 4,000 visitors a day. “This shows why the computer works so well with genetics research,” says David Ulrich, president of Brookline-based Gene-Home, Inc., a company that develops software to manage gene expression data and a collaborator in the GMED project. Ulrich points out the usefulness of the Internet in sharing genetics research results with other scientists.  “How else would you be able to share that data and present it in a way that’s easy to understand?” he asks. “You certainly couldn’t fit it into a journal article.”

The geneticists plan to expand GMED soon with data from a “denser” gene map covering 500,000 SNPs and associations with additional medical conditions. And, says Lenburg, “as we get reports of these associations either being replicated in other populations, or not being replicated, we’ll keep the database updated.” They also hope to spur other genome-wide studies to follow their model of making prepublication data public and searchable.

“One of our goals is to establish the precedent that this information should be made publicly available and not locked away,” Herbert says. “The understanding about what makes us human and affects our risk of disease should not be owned by anyone.”

    

Explore Related Topics:

  • Research
  • Share this story

Share

MED launches trailblazing genomics database

Share

  • Twitter
  • Facebook
  • Reddit
  • LinkedIn
  • Email

Latest from BU Today

  • Student Life

    Your Guide to LGBTQIA+ Resources at Boston University and Beyond

  • LOCAL WEATHER

    We’ve Had 12 Consecutive Weekends of Rain. What’s Up with That?

  • Things-to-do

    To Do Today: Museum of Fine Arts First Friday

  • University News

    BU Data Platform Will Help Massachusetts Track, and Work to Close, Wage Gaps

  • Things-to-do

    To Do Today: Hello, Dolly! at the Lyric Stage Boston

  • Things-to-do

    To Do Today: Jimmy Fund Scooper Bowl to Support Cancer Care and Research

  • University News

    Two Gold Telly Awards Scored by BU Productions

  • Pride Month

    Celebrate Pride Month On and Off Campus

  • Rowing

    BU Rowing Teams Prepare for IRA National Championship Regatta

  • Things-to-do

    To Do Today: Beacon Hill Art Walk

  • In the City

    Getting to Know Your Neighborhood: Davis Square

  • Things-to-do

    To Do Today: The Light in the Piazza

  • Jobs

    Job-Hunting as a New Graduate: What You Need to Know

  • Education

    What’s Behind the Rise in Violence Against Teachers?

  • Fine Arts

    How I Made This: Jacob Whitchurch (CFA’26)

  • Things-to-do

    To Do Today: Seaport Sweat

  • Film & TV

    Did You Win Free Tickets to See Mission: Impossible—The Final Reckoning Tonight?

  • COMMENCEMENT 2025

    Experience BU’s 2025 Commencement from a Terrier Point of View

  • Obituaries

    Remembering Leslie Epstein, Pillar of BU’s Creative Writing Program

  • Voices & Opinion

    POV: This Memorial Day, Remember BU’s Fallen Heroes by Visiting the New Online Honor Wall

Section navigation

  • Sections
  • Must Reads
  • Videos
  • Series
  • Close-ups
  • Archives
  • About + Contact
Get Our Email

Explore Our Publications

Bostonia

Boston University’s Alumni Magazine

BU Today

News, Opinion, Community

The Brink

Pioneering Research from Boston University

  • Twitter
  • Facebook
  • Youtube
  • LinkedIn
  • Instagram
  • Weibo
  • TikTok
© Boston University. All rights reserved. www.bu.edu
© 2025 Trustees of Boston UniversityPrivacy StatementAccessibility
Boston University
Notice of Non-Discrimination: Boston University prohibits discrimination and harassment on the basis of race, color, natural or protective hairstyle, religion, sex or gender, age, national origin, ethnicity, shared ancestry and ethnic characteristics, physical or mental disability, sexual orientation, gender identity and/or expression, genetic information, pregnancy or pregnancy-related condition, military service, marital, parental, veteran status, or any other legally protected status in any and all educational programs or activities operated by Boston University. Retaliation is also prohibited. Please refer questions or concerns about Title IX, discrimination based on any other status protected by law or BU policy, or retaliation to Boston University’s Executive Director of Equal Opportunity/Title IX Coordinator, at titleix@bu.edu or (617) 358-1796. Read Boston University’s full Notice of Nondiscrimination.
Search
Boston University Masterplate
loading Cancel
Post was not sent - check your email addresses!
Email check failed, please try again
Sorry, your blog cannot share posts by email.
MED launches trailblazing genomics database
0
share this