QBP Journal Club

Fall 2023–Spring 2024

  • September 13: Zeng Y., Shih Y-R.V., Baht G.S., Varghese S. (2019). In vivo sequestration of innate small molecules to promote bone healing. Advanced Materials. 32(8):1906022. Download Paper
  • October 3: Ackun-Farmmer M.A., Xiao B., Newman M.R., Benoit D.S.W. (2022). Macrophage depletion increases target specificity of bone-targeted nanoparticles. J Biomed Mater Res A. 110(1):229-238. Download Paper
  • November 2: Benjamin B.V., Steinmetz N.A., Oza N.N., Aguayo J.J., Boahen K. (2021). Neurogrid simulates cortical cell-types, active dendrites, and top-down attention. Neuromorphic Computing and Engineering. 1(1): 013001. Download Paper
  • November 14: Vincent R.L., Gurbatri C.R., Li F., Vardoshvili A., Coker C., Im J., Ballister E.R., Rouanne M., Savage T., De Los Santos-Alexis K., Redenti A., Brockmann L., Komaranchath M., Arpaia N., Danino T. (2023). Probiotic-guided CAR-T cells for solid tumor targeting. Science. 382(6667): 211-218. Download Paper
  • December 11: Pickering A.J., Lamson N.G., Marand M.H., Hwang W., Straehla J.P., Hammond P.T. (2023) Layer-by-layer functionalization improves nanoparticle penetration and glioblastoma targeting in the brain. ACS Nano. 17(23): 24154-24169. Download Paper
  • December 13: Smoulder A.L., Marino P.J., Oby E.R., Snyder S.E., Miyata H., Pavlovsky N.P., Bishop W.E., Yu B.M., Chase S.M., Batista A.P. (2024). A neural basis of choking under pressure. 112(20): 3424-3433.e8. Download Paper

Fall 2022–Spring 2023

  • October 26: Goodale S.E., Ahmed N., Zhao C., de Zwart J.A., Özbay P.S., Picchioni D., Duyn J., Englot D.J., Morgan V.L., Chang C. (2021) fMRI-based detection of alertness predicts behavioral response variability eLife 10:e62376. Download Paper
  • November 11: Bozdag, G.O., Zamani-Dahaj, S.A., Day, T.C., Kahn P.C., Burnetti A.K., Lac D.T., Tong K., Conlin P.L., Balwani A.H., Dyer E.L., Yunjer P.J., Ratcliff W.C. (2023) De novo evolution of macroscopic multicellularity. Nature. 617: 747–754. Download Paper
  • November 30: Ngo, W., Wu, J.L.Y., Lin, Z.P., Zhang Y., Bussin B., Farias A.G., Syed A.M., Chan K., Habsid A., Moffat J., Chan W.C.C. (2022) Identifying cell receptors for the nanoparticle protein corona using genome screens. Nat Chem Biol. 18: 1023–1031. Download Paper
  • February 7: Stiles N.R.B., Weiland J.D., Patel V.R. (2022). Visual-tactile shape perception in the visually restored with artificial vision. J Vision. 22(2): 14. Download Paper.

Fall 2021–Spring 2022

  • October 14: Mackrous I., Carriot J., Jamali M., Cullen K.E. (2019). Cerebellar prediction of the dynamic sensory consequences of gravity. Current Biology. 29(16): 298-2710.e4. Download Paper
  • October 21: Peña J.S., Vazquez M. (2020). VEGF upregulates EGFR expression to stimulate chemotactic behaviors in the rMC-1 model of Müller Glia. Brain Sci. 10(6):330. Download Paper
  • December 2: Patel S.N., Ishahak M., Chaimov D., Velraj A., Lashoto D., Hagan D.W., Buchwald P., Phelps E.A., Agarwal A., Stabler C.L. (2021). Organoid microphysiological system preserves pancreatic islet function with 3D matrix. Science Advances. 7(7):eaba5515. Download Paper

Fall 2020–Spring 2021

  • November 13: Lacko C.S., Singh I., Wall M.A., Garcia A.R., Porvasnik S.L., Rinald C., Schmidt C.E. (2020). Magnetic particle templating of hydrogels: engineering naturally derived hydrogel scaffolds with 3D aligned microarchitecture for nerve repair. J Neural Eng 17: 016057. Download Paper
  • December 10: Ramanujam N. & Crouch B. (2019). Democratizing cancer diagnostics and therapeutics through precision medicine. Technology & Innovation. 20(4): 399-413. Download Paper

Fall 2019–Spring 2020

  • September 5: Del Bonis-O’Donnell J.T., Thakrar A., Hirschberg J.W., Vong D., Queenan B.N., Fygenson D.K., Pennathur S. (2018). DNA-Stabilized Silver Nanoclusters as Specific, Ratiometric Fluorescent Dopamine Sensors. ACS Chemical Neuroscience. 9(4): 849-857. Download Paper
  • October 3: Jain, A., Betancur, M., Patel, G.D., Valmikinathan C.M. Mukhatyar V.J., Vakharia A., Pai S.B., MacDonald T.J., Bellamkonda R.V. (2013) Guiding intracortical brain tumour cells to an extracortical cytotoxic hydrogel using aligned polymeric nanofibres. Nature Mater. 13: 308–316. Download Paper
  • October 10: Churchland, M., Cunningham, J., Kaufman, M.T., Foster J.D., Nuyujukian P., Ryu S.I., Shenoy K.V. (2012). Neural population dynamics during reaching. Nature. 487: 51–56. Download Paper
  • October 31: Huang, HH., Qian, Y. & Del Vecchio, D. (2018). A quasi-integral controller for adaptation of genetic modules to variable ribosome demand. Nat Commun. 9: 5415 . Download Paper
  • November 5: Farra R., Sheppard N.F., McCabe L., Neer R.M., Anderson J.M., Santini J.T., Cima M.J., Langer R. (2012). First-in-human testing of a wirelessly controlled drug delivery microchip. Sci. Transl. Med. 4: 122ra21-122ra21. Download Paper
  • December 4: Singh D., Wang Y., Mallon J., Yang O., Fei J., Poddar A., Ceylan D., Bailey S., Ha T. (2018). Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. 25: 347-354. Download Paper
  • February 13: Abdelfattah A.S., Kawashima T., Singh A., Novak O., Liu H., Shuai Y., Huang Y.C., Campagnola L., Seeman S.C., Yu J., Zheng J., Grimm J.B., Patel R., Friedrich J., Mensh B.D., Paninski L., Macklin J.J., Murphy G.J., Podgorski K., Lin B.J., Chen T.W., Turner G.C., Liu Z., Koyama M., Svoboda K., Ahrens M.B., Lavis L.D., Schreiter E.R.. (2019). Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science. 365(6454): 699-704. Download Paper
  • March 2: Anderson M.A., O’Shea T.M., Burda J.E., Ao Y., Barlatey S.L., Bernstein A.M., Kim J.H., James N.D., Rogers A., Kato B., Wollenberg A.L., Kawaguchi R., Coppola G., Wang C., Deming T.J., He Z., Courtine G., Sofroniew M.V. (2018). Required growth facilitators propel axon regeneration across complete spinal cord injury. Nature. 561(7723): 396-400. Download Paper
  • March 4: Mir M., Reimer A., Haines J.E., Li X.Y., Stadler M., Garcia H., Eisen M.B., Darzacq X. (2017). Dense Bicoid hubs accentuate binding along the morphogen gradient. Genes Dev. 31(17): 1784-1794. Download Paper

Fall 2018–Spring 2019

  • September 20:  Wang Y., Gunasekara D.B., Reed M.I., DiSalvo M., Bultman S.J., Sims C.E., Magness S.T., & Allbritton N.L. (2017). A microengineered collagen scaffold for generating polarized crypt-villus architecture of human small intestinal epithelium. Biomaterials. 128, 44-55.  Download Paper
  • October 11:  Klingberg F., Chau G., Walraven M., Boo S., Koehler A., Chow M.L., Olsen A.L., Im M., Lodyga M., Wells R.G., White E.S., & Hinz B. (2018.) The fibronectin ED-A domain enhances recruitment of latent TGF-beta-binding protein-1 to the fibroblast matrix. Journal of Cell Science. 131.  Download Paper
  • December 12: Koh A., Kang D., Xue Y., Lee S., Pielak R.M., Kim J., Hwang T., Min S., Banks A., Bastien P., et al. (2016). A soft, wearable microfluidic device for the capture, storage, and colorimetric sensing of sweat. Sci. Transl. Med. 8:366ra165.  Download Paper

Fall 2017–Spring 2018

  • October 24: Jungmann R., Avendano M.S., Woehrstein J.B., Dai M., Shih W.M., & Yin P. (2014). Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and exchange-PAINT. Nat. Methods. 11, 313–318. Download Paper
  • October 31: Canavesi C., Cogliati A., Hayes A., Tankam P., Santhanam A., & Rolland J.P. (2017). 3D wide field-of-view Gabor-domain optical coherence microscopy advancing real-time in-vivo imaging and metrology. Proc. SPIE 10053, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXI, 100530Z. Download Paper
  • November 28: Betzel R.F. & Bassett D.S. (2016). Multi-scale brain networks. Neuroimage. 160, 73-83. Download Paper
  • December 12: Richardson S.M., Mitchell L.A., Stracquadanio G., Yang K., Dymond J.S., DiCarlo J.E., Lee D., Huang C.L.V., Chandrasegaran S., Cai Y., et al. (2017). Design of a synthetic yeast genome. Science. 355, 1040–1044. Download Paper