{"id":58,"date":"2011-09-28T13:54:55","date_gmt":"2011-09-28T17:54:55","guid":{"rendered":"https:\/\/www.bu.edu\/sscores\/?page_id=58"},"modified":"2014-09-25T10:06:33","modified_gmt":"2014-09-25T14:06:33","slug":"microarray","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/sscores\/cores\/microarray\/","title":{"rendered":"Microarray &amp; Bioinformatics Core"},"content":{"rendered":"<h4><i>The mission of the NIAMS SSc Genomics and Bioinformatics Core is to provide high quality data generation and analysis of SSc samples at a reasonable cost to investigators.<\/i><\/h4>\n<h3>PI &#8211; Michael Whitfield, PhD<\/h3>\n<table border=\"0\">\n<tbody>\n<tr>\n<td><strong>Contact<\/strong><\/td>\n<td><\/td>\n<td><\/td>\n<\/tr>\n<tr>\n<td>Tammara Wood<\/td>\n<td>603.650.1105<\/td>\n<td><a href=\"mailto:tammara.a.wood@dartmouth.edu\">tammara.a.wood@dartmouth.edu<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>The Core will provide:<\/p>\n<ul>\n<li>Experimental design consults<\/li>\n<li>Digital barcoding and sample tracking<\/li>\n<li>Automated high quality RNA production<\/li>\n<li>Quality control using standardized and proven protocols<\/li>\n<li>Samples hybridized to Agilent whole-genome DNA microarrays<\/li>\n<li>Each dataset will be analyzed with a combination of algorithms for differential gene expression, time course analysis, patient subgrouping, and differential pathway activation as appropriate<\/li>\n<\/ul>\n<p><a href=\"\/sscores\/files\/2011\/09\/Mike-and-I_3.jpg\"><img loading=\"lazy\" class=\"size-thumbnail wp-image-412 alignleft\" title=\"Mike and Tam\" src=\"\/sscores\/files\/2011\/09\/Mike-and-I_3-150x150.jpg\" alt=\"Mike and I_3\" width=\"150\" height=\"150\" \/><\/a><\/p>\n<p>Each data will be analyzed for differential gene expression and provided to users as raw data, or in a heatmap format that can be viewed in Java Treeview. Additional bioinformatic analyses can be performed (call for pricing).<\/p>\n<p><a href=\"https:\/\/www.bu.edu\/sscores\/cores\/microarray\/microarray-core-rna-guide\/\">Click here for the RNA Submission Guide<\/a><\/p>\n<p><a href=\"\/sscores\/files\/2011\/09\/Picture5.png\"><img loading=\"lazy\" class=\"alignleft size-medium wp-image-118\" title=\"Picture5\" src=\"\/sscores\/files\/2011\/09\/Picture5-636x219.png\" alt=\"Picture5\" width=\"509\" height=\"175\" srcset=\"https:\/\/www.bu.edu\/sscores\/files\/2011\/09\/Picture5-636x219.png 636w, https:\/\/www.bu.edu\/sscores\/files\/2011\/09\/Picture5.png 877w\" sizes=\"(max-width: 509px) 100vw, 509px\" \/><\/a><\/p>\n<p><a href=\"\/sscores\/files\/2011\/09\/Picture4.png\"><img loading=\"lazy\" class=\"alignright size-medium wp-image-116\" title=\"Picture4\" src=\"\/sscores\/files\/2011\/09\/Picture4-636x211.png\" alt=\"Picture4\" width=\"509\" height=\"169\" srcset=\"https:\/\/www.bu.edu\/sscores\/files\/2011\/09\/Picture4-636x211.png 636w, https:\/\/www.bu.edu\/sscores\/files\/2011\/09\/Picture4.png 723w\" sizes=\"(max-width: 509px) 100vw, 509px\" \/><\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>The mission of the NIAMS SSc Genomics and Bioinformatics Core is to provide high quality data generation and analysis of SSc samples at a reasonable cost to investigators. PI &#8211; Michael Whitfield, PhD Contact Tammara Wood 603.650.1105 tammara.a.wood@dartmouth.edu The Core will provide: Experimental design consults Digital barcoding and sample tracking Automated high quality RNA production [&hellip;]<\/p>\n","protected":false},"author":4558,"featured_media":0,"parent":12,"menu_order":5,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/pages\/58"}],"collection":[{"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/users\/4558"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/comments?post=58"}],"version-history":[{"count":29,"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/pages\/58\/revisions"}],"predecessor-version":[{"id":570,"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/pages\/58\/revisions\/570"}],"up":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/pages\/12"}],"wp:attachment":[{"href":"https:\/\/www.bu.edu\/sscores\/wp-json\/wp\/v2\/media?parent=58"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}