{"id":299,"date":"2017-07-27T17:36:03","date_gmt":"2017-07-27T21:36:03","guid":{"rendered":"https:\/\/www.bu.edu\/qbp\/?page_id=299"},"modified":"2025-10-17T11:14:48","modified_gmt":"2025-10-17T15:14:48","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/qbp\/publications\/","title":{"rendered":"QBP Trainee Publications"},"content":{"rendered":"

2025<\/strong><\/span><\/h3>\n
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Y\u00fccel, M.A., Anderson, J.E., Rogers, D.<\/strong>, Hajirahimi, P., Farzam, P., Gao, Y., Kaplan, R.I., Braun, E.J., Mukadam, N., Duwadi, S., Carlton, L., Beeler, D., Butler, L.K., Carpenter, E., Girnis, J., Wilson, J., Tripathi, V., Zhang, Y., Sorger, B., von L\u00fchmann, A., Somers, D.C., Cronin-Golomb, A., Kiran, S., Ellis, T.D., Boas, D.A., 2025. Quantifying the impact of hair and skin characteristics on fNIRS signal quality for enhanced inclusivity. Nat Hum Behav 1\u201318.

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Tran, J.C.<\/strong>, Kuffner, C.J.<\/strong>, Marzilli, A.M., Miller, R.E., Silfen, Z.E.<\/strong>, McMahan, J.B., Sloas, D.C., Chen, C.S., Ngo, J.T., 2025. Fluorescein-based SynNotch adaptors for regulating gene expression responses to diverse extracellular and matrix-based cues. Nat Commun 16, 852.

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Tang, R.P.<\/strong>, Kelley, S., K\u00fcreli, G., Long, E.A., Bressan, P.R., Shah, S., Erdener, \u015e.E., Jiang, J., Giblin, J.T., Kura, S., Simkulet, M.G., Rauscher, B.C., Schaffer, C.B., Nishimura, N., Thunemann, M., Devor, A., Boas, D.A., 2025. Capillaries susceptible to frequent stall dynamics revealed by comparing OCT and bessel-2PM measurements. J Cereb Blood Flow Metab 0271678X251353141.

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Rogers, D.<\/strong>, O\u2019Brien, W.J., Gao, Y., Zimmermann, B., Grover, S., Zhang, Y., Gaona, A.K., Duwadi, S., Anderson, J.E., Carlton, L., Rahimi, P., Farzam, P.Y., L\u00fchmann, A. von, Reinhart, R.M.G., Boas, D.A., Y\u00fccel, M.A., 2025. Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography. NPh 12, 025006.

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Riley, A.T.<\/strong>, Robson, J.M., Ulanova, A., Green, A.A., 2025. Generative and predictive neural networks for the design of functional RNA molecules. Nat Commun 16, 4155.

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Ravasio, C.R., Kondabolu, K., Zhou, S.<\/strong>, Lowet, E., San Antonio, E.<\/strong>, Mount, R.A.<\/strong>, Bhogal, S.K., Han, X., 2025. Kilohertz electrical stimulation evokes robust cellular responses like conventional frequencies but distinct population dynamics. Commun Biol 8, 19.

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Parsanasab, M., Mehendale, A.M.<\/strong>, Karrobi, K., Roblyer, D.M., Venugopalan, V., 2025. Structured light imaging mesoscopy: detection of embedded morphological changes in superficial tissues. JBO 30, 065001.

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Mehendale, A.M.<\/strong>, Parsanasab, M., Karrobi, K., Vo, H., Bujor, A.M., Venugopalan, V., Roblyer, D., 2025. Structured light imaging mesoscopy: application to skin changes in scleroderma. BIOS 2, 025002.

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McIntyre, D.<\/strong>, Arguijo, D., Kawata, K., Densmore, D., 2025. Component library creation and pixel array generation with micromilled droplet microfluidics. Microsyst Nanoeng 11, 6.

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Liu, B., Tang, R.P.<\/strong>, Long, E.A., Yaqoob, Z., Simkulet, M.G., Postnov, D.D., Erdener, \u015e.E., Boas, D.A., Cheng, X., 2025. Mapping of blood flow and slow speckle tissue dynamics using laser speckle contrast imaging. Biomed. Opt. Express, BOE 16, 3712\u20133724.

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Li, M., Xiao, S., Ni, H., Ding, G., Yuan, Y., Marar, C.<\/strong>, Mertz, J., Cheng, J.-X., 2025. Ultrasensitive in vivo infrared spectroscopic imaging via oblique photothermal microscopy. Nat Commun 16, 6065.

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Kuffner, C.J.<\/strong>, Marzilli, A.M., Ngo, J.T., 2025. RNA-stabilized coat proteins for sensitive and simultaneous imaging of distinct single mRNAs in live cells. Nat Methods 1\u201312.

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Kang, N.R., Im, J., Biondo, J.R., Sharpes, C.E., Rhea, K.A., Garden, P.M., Jaramillo Montezco, J.J.<\/strong>, Ringaci, A., Grinstaff, M.W., Phillips, D.A., Miklos, A.E., Green, A.A., 2025. A Rapid and Modular Nanobody Assay for Plug-and-Play Antigen Detection. ACS Synth. Biol. 14, 3423\u20133433.

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DuBois, E.M., Herrema, K.E.<\/strong>, Simkulet, M.G., Hassan, L.F., O\u2019Connor, P.R., Sen, R., O\u2019Shea, T.M., 2025. Thioether-Functionalized Cellulose for the Fabrication of Oxidation-Responsive Biomaterial Coatings and Films. Advanced Healthcare Materials 14, 2403021.

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Assi, J., Stefan, S., Tang, R.<\/strong>, K\u00fcreli, G., Kura, S., Long, E., Jiang, J., Boas, D., Lee, J., 2025. Machine learning-based method to detect capillary stalling using optical coherence tomography. Biomed. Opt. Express, BOE 16, 1807\u20131818.<\/span><\/div>\n<\/div>\n

2024<\/strong><\/span><\/h3>\n
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Vincent, J.P.<\/strong>, Economo, M.N., 2024. Assessing Cross-Contamination in Spike-Sorted Electrophysiology Data. eNeuro 11.

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Tague, N., Coriano-Ortiz, C.<\/strong>, Sheets, M.B., Dunlop, M.J., 2024. Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12, RP87303.

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Sherman, J., Bortz, E., Antonio, E.S.<\/strong>, Tseng, H., Raiff, L., Han, X., 2024. Ultrasound pulse repetition frequency preferentially activates different neuron populations independent of cell type. J. Neural Eng. 21, 056008.

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Roehner, N., Roberts, J.<\/strong>, Lapets, A., Gould, D., Akavoor, V., Qin, L., Gordon, D.B., Voigt, C., Densmore, D., 2024. GOLDBAR: A Framework for Combinatorial Biological Design. ACS Synth. Biol. 13, 2899\u20132911.

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Marar, C.<\/strong>, Jiang, Y., Li, Y., Lan, L., Zheng, N., Chen, G., Yang, C., Cheng, J.-X., 2024. Wireless neuromodulation at submillimeter precision via a microwave split-ring resonator. Science Advances 10, eado5560.

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L\u00fchmann, A. von, Kura, S., O\u2019Brien, W.J., Zimmermann, B.B., Duwadi, S., Rogers, D.<\/strong>, Anderson, J.E., Farzam, P., Snow, C., Chen, A., Y\u00fccel, M.A., Perkins, N., Boas, D.A., 2024. ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging. NPh 11, 036601.

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Liu, Q., Mendoza, D.A.<\/strong>, Yasar, A., Caygara, D., Kassem, A., Densmore, D., Yazicigil, R.T., 2024. Integrated Real-Time CMOS Luminescence Sensing and Impedance Spectroscopy in Droplet Microfluidics. IEEE Transactions on Biomedical Circuits and Systems 18, 1233\u20131252.

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Doran, P.R., Fomin-Thunemann, N., Tang, R.P.<\/strong>, Balog, D., Zimmerman, B., K\u0131l\u0131\u00e7, K., Martin, E.A., Kura, S., Fisher, H.P., Chabbott, G., Herbert, J., Rauscher, B.C., Jiang, J.X., Sakadzic, S., Boas, D.A., Devor, A., Chen, I.A., Thunemann, M., 2024. Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination. NPh 11, 034310.

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Chen, G., Yu, F., Shi, L., Marar, C.<\/strong>, Du, Z., Jia, D., Cheng, J.-X., Yang, C., 2024. High-Precision Photoacoustic Neural Modulation Uses a Non-Thermal Mechanism. Advanced Science 11, 2403205.<\/span><\/div>\n<\/div>\n

2023<\/strong><\/span><\/h3>\n
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Sloas, D.C., Tran, J.C.<\/strong>, Marzilli, A.M., Ngo, J.T., 2023. Tension-tuned receptors for synthetic mechanotransduction and intercellular force detection. Nat Biotechnol 41, 1287\u20131295.

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Shroff, S.N.<\/strong>, Lowet, E., Sridhar, S., Gritton, H.J., Abumuaileq, M., Tseng, H.-A., Cheung, C., Zhou, S.L.<\/strong>, Kondabolu, K., Han, X., 2023. Striatal cholinergic interneuron membrane voltage tracks locomotor rhythms in mice. Nat Commun 14, 3802.

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Pilvar, A., Mehendale, A.M.<\/strong>, Karrobi, K., El-Adili, F., Bujor, A., Roblyer, D., 2023. Spatial frequency domain imaging for the assessment of scleroderma skin involvement. Biomed. Opt. Express, BOE 14, 2955\u20132968.

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Mount, R.A.<\/strong>, Athif, M., O\u2019Connor, M., Saligrama, A., Tseng, H., Sridhar, S., Zhou, C., Bortz, E., San Antonio, E.<\/strong>, Kramer, M.A., Man, H.-Y., Han, X., 2023. The autism spectrum disorder risk gene NEXMIF over-synchronizes hippocampal CA1 network and alters neuronal coding. Front. Neurosci. 17.

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McIntyre, D.<\/strong>, Lashkaripour, A., Arguijo, D., Fordyce, P., Densmore, D., 2023. Versatility and stability optimization of flow-focusing droplet generators via quality metric-driven design automation. Lab on a Chip 23, 4997\u20135008.

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Lowet, E., Sheehan, D.J., Chialva, U., Pena, R.D.O., Mount, R.A.<\/strong>, Xiao, S., Zhou, S.L.<\/strong>, Tseng, H., Gritton, H., Shroff, S.<\/strong>, Kondabolu, K., Cheung, C., Wang, Y., Piatkevich, K.D., Boyden, E.S., Mertz, J., Hasselmo, M.E., Rotstein, H.G., Han, X., 2023. Theta and gamma rhythmic coding through two spike output modes in the hippocampus during spatial navigation. Cell Reports 42.

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Levitt, J.<\/strong>, Yang, Z., Williams, S.D., L\u00fctschg Espinosa, S.E., Garcia-Casal, A., Lewis, L.D., 2023. EEG-LLAMAS: A low-latency neurofeedback platform for artifact reduction in EEG-fMRI. NeuroImage 273, 120092.

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Levitt, J.<\/strong>, van der Kouwe, A., Jeong, H., Lewis, L.D., Bonmassar, G., 2023. The MotoNet: A 3 Tesla MRI-Conditional EEG Net with Embedded Motion Sensors. Sensors 23, 3539.

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Gao, Y., Rogers, D.<\/strong>, L\u00fchmann, A. von, Ortega-Martinez, A., Boas, D.A., Y\u00fccel, M.A., 2023. Short-separation regression incorporated diffuse optical tomography image reconstruction modeling for high-density functional near-infrared spectroscopy. NPh 10, 025007.

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Butler, L.K., Pecukonis, M., Rogers, D.<\/strong>, Boas, D.A., Tager-Flusberg, H., Y\u00fccel, M.A., 2023. The Role of the Dorsolateral Prefrontal Cortex in the Production and Comprehension of Phonologically and Semantically Related Words. Brain Sciences 13, 1113.<\/span><\/div>\n<\/div>\n

Bailes, S.M.<\/strong>, Gomez, D.E., Setzer, B., Lewis, L.D., 2023. Resting-state fMRI signals contain spectral signatures of local hemodynamic response timing. eLife 12, e86453.<\/p>\n

2022<\/strong><\/span><\/h3>\n
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Ortega-Martinez, A., Rogers, D.<\/strong>, Anderson, J., Farzam, P., Gao, Y., Zimmermann, B., Y\u00fccel, M.A., Boas, D.A., 2022. How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS? NPh 10, 013504.

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Ortega-Martinez, A., L\u00fchmann, A. von, Farzam, P., Rogers, D.<\/strong>, Mugler, E., Boas, D.A., Y\u00fccel, M.A., 2022. Multivariate Kalman filter regression of confounding physiological signals for real-time classification of fNIRS data. NPh 9, 025003.

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Lowet, E., Kondabolu, K., Zhou, S.<\/strong>, Mount, R.A.<\/strong>, Wang, Y., Ravasio, C.R., Han, X., 2022. Deep brain stimulation creates informational lesion through membrane depolarization in mouse hippocampus. Nat Commun<\/em> 13, 7709.

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…<\/div>\n
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2016<\/strong><\/span><\/h3>\n

Spencer, N.J.<\/b>, Hawley, M.L., Colburn, H.S. “Relating inter-aural difference sensitivity performance thresholds measured among various tasks in normal-hearing and hearing-impaired listeners\u201d. <\/span>J. Acoust. Soc. Am.<\/span><\/i> (2016).<\/span><\/p>\n

Pardee K, Green AA, Takahashi MK, <\/span>Braff D<\/b>, Lambert G, Lee JW, Ferrante T, Ma D, Donghia N, Fan M, Daringer NM, Bosch I, Dudley DM, O’Connor DH, Gehrke L, Collins JJ. \u201cRapid, low-cost detection of Zika virus using programmable biomolecular components\u201d. <\/span>Cell<\/span><\/i>. (2016).<\/span><\/p>\n

Ali H. Badreddine<\/b>, Tomas Jordan, Irving J. Bigio. \u201cReal-time imaging of action potentials in nerves using changes in birefringence\u201d. <\/span>Biomedical Optics Express<\/span><\/i>. <\/span>7<\/b>(5), 1966-1973 (2016).<\/span><\/p>\n

Eichenbaum H, Komorowski R, MacDonald CJ, <\/span>Kraus BJ<\/b>, Robitsek J. \u201cHow does the hippocampus support the spatial and temporal attributes of memory?\u201d In: P Jackson, R Berman, A Chiba, M Ragozzino. The Neurobiological Basis of Memory: A System, Attribute, and Process Analysis: A Festschrift in Honor of Raymond P. Kesner. New York: Springer. pp. 39-58 (2016).<\/span><\/p>\n

Aaron H. Colby<\/b>, Rong Liu, Morgan D. Schulz, Robert F. Padera, Yolonda L. Colson, Mark W. Grinstaff. “Two-Step Delivery: Exploiting the Partition Coefficient Concept to Increase Intratumoral Paclitaxel Concentrations In vivo Using Responsive Nanoparticles”. <\/span>Nature Scientific Reports<\/span><\/i>. 6, 18720 (2016).<\/span><\/p>\n

Benjamin G. Cooper, <\/span>Rachel C. Stewart<\/b>, Deborah Burstein, Brian D. Snyder, Mark W. Grinstaff. \u201cA Tissue-penetrating Double Network Restores Mechanical Properties of Degenerated Articular Cartilage\u201d. <\/span>Angewandte Chemie International Edition<\/span><\/i>. 55, 4226-4230 (2016).<\/span><\/p>\n

Victoria L. M. Herrera<\/span>, Aaron H. Colby<\/b>, Glaiza A. L. Tan, Ann M. Moran, Michael J. O\u2019Brien, Yolonda L. Colson, Nelson Ruiz-Opazo, Mark W. Grinstaff. \u201cEvaluation of Expansile Nanoparticle Tumor Localization and Efficacy In a Cancer Stem Cell-Derived Model of Pancreatic Peritoneal Carcinomatosis\u201d. <\/span>Nanomedicine. <\/span><\/i>11, 1001-1015 (2016, invited paper).<\/span><\/p>\n

Zheng X, Krakowiak J, <\/span>Patel N<\/b>, Beyzavi A, Ezike J, Khalil AS Pincus D. (2016) \u201cDynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation.\u201d <\/span>ELife<\/span><\/i>. Nov 10;5 (2016).<\/span><\/p>\n

Rodriguez NM, <\/span>Wong WS<\/b>, Liu L, Dewar R, Klapperich CM. \u201cA fully integrated paperfluidic molecular diagnostic chip for the extraction, amplification, and detection of nucleic acids from clinical samples\u201d. <\/span>Lab Chip. <\/span><\/i>16<\/b>(4): 753-63 (2016). PMC4747825.<\/span><\/p>\n

J. B. Schroeder<\/b>, J. T. Ritt. “Selection of Head and Whisker Coordination Strategies During Goal Oriented Active Touch”. <\/span>J. Neurophys.<\/span><\/i> 115: 1797\u20131809 (2016).<\/span><\/p>\n

E.P. Canovi\u0107<\/b>, A.J. Zollinger<\/strong>, S.N. Tam, M.L. Smith, D. Stamenovi\u0107. \u201cTensional Homeostasis in Endothelial Cells is a Multicellular Phenomenon\u201d. <\/span>Am J Physiol Cell Physiol.<\/span><\/i> 1;311(3) (2016).<\/span><\/p>\n

S. M. Scherr, G. G. Daaboul, J. T. Trueb, <\/span>D. D. Sevenler<\/b>, H. E. Fawcett, B. B. Goldberg, J. H. Connor, M. S. \u00dcnl\u00fc.\u00a0“Real-Time Capture and Visualization of Individual Viruses in Complex Media”.\u00a0<\/span>Acs Nano<\/span><\/i>. (January 2016).<\/span><\/p>\n

Chakravarti, D., Cho, J.H., <\/span>Weinberg, B. H.<\/b>, Wong, N. M., Wong, W. W. \u201cSynthetic Biology Approaches in Cancer Immunotherapy, Genetic Network Engineering, and Genome Editing\u201d. <\/span>Integrative Biology.<\/span><\/i> 8<\/b>(4), 504-517 (2016).<\/span><\/p>\n

David C. Sloas<\/b>, Ran Zhuo, Hongbo Xue, Anna R. Chambers, Eric Kolaczyk, Daniel B. Polley and Kamal Sen. Interactions across Multiple Stimulus Dimensions in Primary Auditory Cortex. <\/span>eNeuro<\/span><\/i>. <\/span>3<\/b>:4 (2016).<\/span><\/p>\n

2015<\/strong><\/span><\/h3>\n

AH Badreddine<\/b>, KJ Schoener, IJ Bigio. \u201cElucidating the temporal dynamics of optical birefringence changes in crustacean nerves\u201d. <\/span>Biomed. Optics Express<\/span><\/i>. <\/span>6<\/b>(10), 4165-4178 (September 2015). PMCID: PMC4605072.<\/span><\/p>\n

KF Chou,<\/b> AM Dennis. \u201cF\u00f6rster Resonance Energy Transfer between Quantum Dot Donors and Quantum Dot Acceptors\u201d. <\/span>Sensors<\/span><\/i>. <\/span>15<\/b>(6): 13288-13325 (2015). PMID: 26057041.<\/span><\/p>\n

Kraus BJ<\/b>, Brandon MP, Robinson II RJ, Connerney MA, Hasselmo ME, Eichenbaum H. \u201cDuring running in place, grid cells integrate elapsed time and distance run\u201d. <\/span>Neuron.<\/span><\/i> 88: 578-589 (2015).<\/span><\/p>\n

Christopher D Garay<\/b>, Jonathan M Dreyfuss, James E Galagan. \u201cMetabolic modeling predicts metabolite changes in Mycobacterium tuberculosis\u201d. <\/span>BMC Syst Biol.<\/span><\/i> 16<\/b>;9: 57 (Epub September 16, 2015).<\/span><\/p>\n

Hongyi Lei, Sophie C. Hofferberth, Rong Liu, <\/span>Aaron Colby<\/b>, Kristie M. Tevis, Paul Catalano, Mark W. Grinstaff, Yolonda L. Colson. \u201cPaclitaxel-Loaded Expansile Nanoparticles Enhance Chemotherapeutic Drug-delivery in Mesothelioma 3D Multicellular Spheroids\u201d. <\/span>Journal of Thoracic and Cardiovascular<\/span><\/i> Surgery.<\/span><\/i> 149,<\/span> 1417-1425 (2015).<\/span><\/p>\n

Michelle Stolzoff, Iriny Ekladious, <\/span>Aaron H. Colby<\/b>, Yolonda L. Colson, Tyrone M. Porter, and Mark W. Grinstaff. \u201cSynthesis and Characterization of Hybrid Polymer\/Lipid Expansile Nanoparticles: Imparting Surface Functionality for Targeting and Stability\u201d. <\/span>Biomacromolecules. <\/span><\/i>16, 1958\u20131966 (2015).<\/span><\/p>\n

Harvey B.C.<\/b>, Parameswaran H, Lutchen K.R. \u201cCan Breathing-Like Pressure Oscillations Reverse or Prevent Narrowing of Small Intact Airways?\u201d. <\/span>J Appl Physiol. <\/span><\/i>119<\/b>(1): 47-54 (2015).<\/span><\/p>\n

P Diep, S Pannem, J Sweer, J Lo, M Snyder, G Stueber, Y Zhao, S Tabassum, <\/span>R Istfan<\/b>, J Wu, S Erramilli, Darren Roblyer. \u201cThree-Dimensional Printed Optical Phantoms with Customized Absorption and Scattering Properties\u201c. <\/span>Biomedical Optics Express.<\/span><\/i> 6<\/b>(11) (2015).<\/span><\/p>\n

D Sevenler<\/b>, M Selim \u00dcnl\u00fc.\u00a0“Numerical Techniques for High-Throughput Reflectance Interference Biosensing”. <\/span>Journal of Modern Optics<\/span><\/i>. 1-6 (2015).<\/span><\/p>\n

Gee JM, Gibbons MB, Taheri M, Palumbos S, Morris SC, Smeal RM, Flynn KF, <\/span>Economo MN<\/b>, Cizek CG, Capecchi M, Tvrdik P, Wilcox KS, White JA. \u201cImaging Activity in Astrocytes and Neurons with Genetically Encoded Calcium Indicators Following <\/span>in utero<\/span><\/i> Electroporation\u201d. <\/span>Frontiers in Molecular Neuroscience<\/span><\/i>. <\/span>8<\/b>: 10 (2015). PMCID: PMC4397926.<\/span><\/p>\n

E.G. Roberts, Elaine L. Lee, <\/span>Daniel Backman<\/b>, Jo Ann Buczek-Thomas, Sitaram Emani, and Joyce Y. Wong. \u201cEngineering Myocardial Tissue Patches with Hierarchical Structure-Function\u201d. <\/span>Annals of Biomedical Engineering.<\/span><\/i> 43<\/b>(3): 762-773 (2015, Epub 2014 Dec 17). PMCID: PMC4380759.<\/span><\/p>\n

C. Zhang, E. Shenk, <\/span>L. Blaha<\/b>, B. Ryu, R. Alani, M. Cabodi, J.Y. Wong. \u201cA Simple Engineered Platform Reveals Different Modes of Tumor-Microenvironmental Cell Interaction\u201d. <\/span>Biofabrication.<\/span><\/i> 8<\/b>(1): 015001. (2015)<\/span><\/p>\n

Y. Park, <\/span>T.A. Pham<\/b>, C. Beigie, M. Cabodi, R.O. Cleveland, J.O. Nagy, J.Y. Wong. \u201cMonodisperse Micro-Oil Droplets Stabilized by Polymerizable Phospholipid Coatings as Potential Drug Carriers\u201d. <\/span>Langmuir.<\/span><\/i> 31<\/b>(36): 9762-70 (2015).<\/span><\/p>\n

Yao, R.,<\/b> J.Y. Wong. \u201cThe Effects of Mechanical Stimulation on Controlling and Maintaining Marrow Stromal Cell Differentiation into Vascular Smooth Muscle Cells\u201d. <\/span>Journal of Biomechanical Engineering. <\/span><\/i>137<\/b>(2): 020907 (2015).<\/span><\/p>\n

Sayeg, M.K., <\/span>Weinberg, B.H.<\/b>, Cha, S.S., Goodloe, M., Wong, W.W., Han, X. \u201cRationally Designed MicroRNA-Based Genetic Classifiers Target Specific Neurons in the Brain\u201d. <\/span>ASC Synthetic Biology.<\/span><\/i> 4<\/b>(7): 788\u2013795 (2015).<\/span><\/p>\n

Mehdi Bourouba Ahmed-Amine Zergoun, <\/span>Joseph S. Maffei<\/b>, Dalia Chila, Djamel Djennaoui, Fatima Asselah, Zine-Charef, Amir,\u00a0 Chafia Touil-Boukoffa and Muhammad H. Zaman. \u201cTNF\u03b1 Antagonization Alters NOS2 Dependent Nasopharyngeal Carcinoma Tumor Growth\u201d. <\/span>Cytokine.<\/span><\/i> (2015).\u00a0<\/span><\/p>\n

2014<\/strong><\/span><\/h3>\n

Vahid Entezari, Prashant N. Bansal, <\/span>Rachel C. Stewart<\/b>, Benjamin A. Lakin, Mark W. Grinstaff, Brian D. Snyder. “Effect of Mechanical Convection on the Partitioning of an Anionic Iodinated Contrast Agent in Intact Patellar Cartilage”. <\/span>Journal of Orthopaedic Research<\/span><\/i>. 32, 1333-1340 (2014).<\/span><\/p>\n

Eichenbaum H, MacDonald CJ, <\/span>Kraus BJ<\/b>. \u201cTime and the hippocampus\u201d. In: D Derdikman & JJ Knierim, eds. Space, Time and Memory in the Hippocampal Formation. Springer-Verlag: Wien. pp. 273-302 (2014).<\/span><\/p>\n

Kimberly A. Zubris<\/b>, Mark W. Grinstaff, Yolonda L. Colson. \u201cNanoparticle Therapy in Lung Cancer\u201d. <\/span>Adult Chest Surgery<\/span><\/i>, Editors: Marsha S. Loeb and Karen W. Davis, The McGraw-Hill Companies. 171, 1346-1349 (2014).<\/span><\/p>\n

Dwyer DJ, Belenky P, Yang JH, MacDonald C, Martell JD, Takahashi N, Chan CTY, Lobritz MA, <\/span>Braff D<\/b>, Schwarz EG, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, Khalil AS, Ting AY, Walker GC, Collins JJ. \u201cAntibiotics induce redox-related physiological alterations as part of their lethality\u201d. <\/span>Proceedings of the National Academy of Sciences USA<\/span><\/i>. 111: E2100\u20132109 (2014).<\/span><\/p>\n

Bartolak-Suki E., LaPrad A.S., <\/span>Harvey B.C.<\/b>, Suki B., Lutchen K.R. \u201cTidal Stretches Differently Regulate the Contractile and Cytoskeletal Elements in Intact Airways\u201d. <\/span>PloS ONE.<\/span><\/i> 9<\/b>(4): e94828 (2014).<\/span><\/p>\n

J Jung, <\/span>R Istfan<\/b>, Darren Roblyer. \u201cNote: A Simple Broad Bandwidth Undersampling Frequency-Domain Digital Diffuse Optical Spectroscopy System\u201d. <\/span>Review of Scientific Instruments.<\/span><\/i> 85 (2014).<\/span><\/p>\n

G Greening, <\/span>R Istfan<\/b>, L Higgins, K Balachandran, Darren Roblyer, M Pierce, TJ Muldoon. \u201cCharacterization of Thin Poly(dimethylsiloxane)-Based Tissue-Simulating Phantoms with Tunable Reduced Scattering and Absorption Coefficients in the Visible to Near-Infrared Domain\u201d. <\/span>Journal of Biomedical Optics.<\/span><\/i> 19<\/b>(11): 115002 (2014).<\/span><\/p>\n

E.P. Canovi\u0107<\/b>, D.T. Seidl, P.E. Barbone, M.L. Smith, D. Stamenovi\u0107. \u201cStiffness Versus Prestress Relationship at Subcellular Length Scale\u201d. <\/span>J Biomech<\/span><\/i>. 47: 3222-5 (2014).<\/span><\/p>\n

S.R. Polio<\/strong>, H. Parameswaran, <\/span>E.P. Canovi\u0107<\/b>, C. Gaut, D. Aksyonova, D. Stamenovi\u0107, M.L. Smith. \u201cTopographical Control of Multiple Cell Adhesion Ligands for Traction Force Microscopy\u201d. <\/span>Integr Biol.<\/span><\/i> 6<\/b>(3): 357-65 (2014).<\/span><\/p>\n

E.P. Canovi\u0107<\/b>, D.T. Seidl, S.R. Polio<\/strong>, A.A. Oberai, P.E. Barbone, D. Stamenovi\u0107, M.L. Smith. \u201cBiomechanical Imaging of Cell Stiffness and Prestress with Subcellular Resolution\u201d<\/span>.<\/span><\/i> Biomech Model Mechanobiol<\/span><\/i>. 13: 665-78 (2014).<\/span><\/p>\n

S.R. Polio<\/b>, M.L. Smith. \u201cPatterning and Image Processing for Traction Force Microscopy\u201d. <\/span>Methods Cell Biol<\/span><\/i>. 121: 17-31 (2014).<\/span><\/p>\n

Economo MN<\/b>, Martinez JJ, White JA. \u201cMembrane Potential-Dependent Integration of Synaptic Inputs in Entorhinal Stellate Neurons\u201d. <\/span>Hippocampus. <\/span><\/i>24<\/b>: 1493-1505 (2014). PMCID: PMC4236276.<\/span><\/p>\n

Gee JM, Smith NA, Fernandez FR, <\/span>Economo MN<\/b>, Brunert D, Rothermal M, Morris SC, Talbot A, Palumbos S, Ichida J, Shepherd JD, West PJ, Wachowiak M, Capecchi MR, Wilcox KS, White JA, Tvrdik P. \u201cImaging Activity in Neurons and Glia with a New GCaMP5G Reporter Mouse\u201d. <\/span>Neuron<\/span><\/i>. <\/span>83<\/b>: 1058-1072 (2014). PMCID: PMC4156920.<\/span><\/p>\n

Magnani C, <\/span>Economo MN<\/b>, White JA, Moore LE. \u201cNonlinear Properties of Medial Entorhinal Cortex Neurons Reveal Frequency Selectivity During Multi-Sinusoidal Stimulation\u201d. <\/span>Frontiers in Cellular Neuroscience.<\/span><\/i> 8<\/b>: 239 (2014). PMCID: PMC4137241.<\/span><\/p>\n

S.K. Kim, D. Gurari, C. Yang, <\/span>C.D. Hartman<\/b>, M. Jacobsen, J.Y. Wong, M. Betke.<\/span> \u201cI\u2019m Cell: A Touch Pad Tool for Annotating Cell Images\u201d. <\/span>Biomedical Signal Analysis (BSA): 3-D Imaging in Medicine. <\/span><\/i>Florianopolis, Brazil, 3 pages (2014).<\/span><\/p>\n

Park, Y., J.B. Smith, <\/span>T. Pham<\/b>, R.D. Whitaker. C. Sucato, J.A. Hamilton, E. Bartolak-Suki, J.Y. Wong. \u201cEffect of PEG Molecular Weight on Stability, T2 contrast, Cytotoxicity, and Cellular Uptake of Superparamagnetic Iron Oxide Nanoparticles (SPIONs)\u201d. <\/span>Colloids and Surfaces B: Biointerfaces<\/span><\/i>. <\/span>119<\/b>: 106\u2013114 (2014). PMCID: PMC4108172.<\/span><\/p>\n

Joseph Maffei<\/b>, Jaya Srivastava, Brian Fallica, Muhammad H. Zaman. \u201cCombinative <\/span>in vitro<\/span><\/i> Studies and Computational Model to Predict 3D Cell Migration Response to Drug Insult\u201d. <\/span>Integrative Biology.<\/span><\/i> 6<\/b>(10): 957-72 (October 2014).<\/span><\/p>\n

Xiaofeng Liu, <\/span>Diego A. Vargas<\/b>, Dongyuan L\u00fc,\u00a0 Yan Zhang, Muhammad H. Zaman, Mian Long. \u201cComputational Modeling of Stem Cell Migration<\/span>\u201d<\/span><\/i>. <\/span>Cellular and Molecular Bioengineering. <\/span><\/i>7<\/b>(2): 196-204 (2014).<\/span><\/p>\n

2013<\/strong><\/span><\/h3>\n

Aaron H. Colby<\/b>, Yolonda L. Colson, Mark W. Grinstaff. “Microscopy and qNano Characterization of the Swelling of pH-Responsive, Polymeric Expansile Nanoparticles”. <\/span>Nanoscale<\/span><\/i>. 5, 3496-3504 (2013). PMCID: PMC3878811.<\/span><\/p>\n

Kimberly Ann V. Zubris, Rong Liu, <\/span>Aaron Colby<\/b>, Morgan D. Schulz, Yolonda L. Colson, Mark W. Grinstaff. \u201cIn Vitro Activity of Paclitaxel-Loaded Polymeric Expansile Nanoparticles in Breast Cancer Cells\u201d. <\/span>Biomacromolecules<\/span><\/i>. 14, 2074-2082 (2013). PMCID: PMC3915286.<\/span><\/p>\n

James Eldridge, <\/span>Aaron H. Colby<\/b>, Geoff Willmott, Sam Yu, Mark W. Grinstaff. \u201cUse of Tunable Pores for Accurate Characterization of Micro- and Nano- Particle Systems in Nanomedicine\u201d. <\/span>Selected Topics in Nanomedicine<\/span><\/i>. 3, 219-256 (2013).<\/span><\/p>\n

Modi SR, <\/span>Lee HH<\/b>, Spina CS, Collins JJ. \u201cAntibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome\u201d. <\/span>Nature.<\/span><\/i> 499<\/b>: 219\u2013222 (2013).<\/span><\/p>\n

Benjamin J. Kraus<\/b>, Robert J. Robinson II, John A. White, Howard Eichenbaum, Michael E. Hasselmo. \u201cHippocampal \u2018Time Cells\u2019: Time versus Path Integration\u201d. <\/span>Neuron<\/span><\/i>. <\/span>78<\/b>(6): 1090\u20131101 (June 19, 2013).<\/span><\/p>\n

James E. Galagan, Kyle Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, Ren\u00e9 Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, <\/span>Christopher Garay<\/b>, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti<\/strong>, Diogo Camacho, Jonathan Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik. \u201cThe <\/span>Mycobacterium tuberculosis<\/span><\/i> regulatory network and hypoxia\u201d. <\/span>Nature.<\/span><\/i> 499<\/b>(7457): 178\u2013183 (July 11, 2013).<\/span><\/p>\n

Ben A. Lakin, Daniel J. Grasso, Samir S. Shah, <\/span>Rachel C. Stewart<\/b>, Prashant N. Bansal, Jonathan D. Freedman, Mark W. Grinstaff, Brian D. Snyder. \u00a0\u201cCationic Agent Contrast-Enhanced Computed Tomography Imaging of <\/span>Osteoarthritis and Cartilage<\/span><\/i>. 21, 60-68 (2013). PMCID: PMC3878721.<\/span><\/p>\n

Rachel C. Stewart<\/b>, Prashant N. Bansal,<\/span> Hrvoje Lusic,<\/span> Vahid Entezari,<\/span> Brian D. Snyder, Mark W. Grinstaff. \u201cContrast-Enhanced Computed Tomography using a High Affinity Cationic Contrast Agent for Imaging Ex vivo Bovine, Intact Ex vivo Rabbit, and In vivo Rabbit Cartilage\u201d. <\/span>Radiology<\/span><\/i>. 266, 130-140 (2013). PMCID: PMC3528972.<\/span><\/p>\n

Benjamin A Lakin, Dan J Grasso, <\/span>Rachel C. Stewart<\/b>, Jonathan D. Freedman, Brian D. Snyder, Mark W. Grinstaff. “Contrast Enhanced CT Attenuation Correlates with the GAG Content of Bovine Meniscus”. <\/span>Journal of Orthopaedic Research.<\/span><\/i> 11, 1765-1771 (2013). PMCID: PMC3931129.<\/span><\/p>\n

Rong Liu, Denis M. Gilmore, <\/span>Kimberly Ann V. Zubris<\/b>, Xiaoyin Xu, Paul J. Catalano, Robert F. Padera, Mark W. Grinstaff, Yolonda L. Colson. “Prevention of Nodal Metastases in Breast Cancer Following the Lymphatic Migration of Paclitaxel-loaded Expansile Nanoparticles”. <\/span>Biomaterials<\/span><\/i>. 34, 1810\u20131819 (2013). PMC: PMC3541056.<\/span><\/p>\n

Denis Gilmore, Morgan Schulz, Rong Liu, <\/span>Kimberly Ann V Zubris<\/b>, Robert F. Padera, Paul J. Catalano<\/span>,<\/span> Mark W Grinstaff, Yolonda L. Colson. “Cytoreductive Surgery and Intraoperative Administration of Paclitaxel-loaded Expansile Nanoparticles Delay Tumor Recurrence in Ovarian Carcinoma”. <\/span>Annals of Surgical Oncology<\/span><\/i>. 20, 1684-1693 (2013). PMID: 23128939.<\/span><\/p>\n

Kimberly Ann V. Zubris<\/b>, Rong Liu, Aaron Colby, Morgan D. Schulz, Yolonda L. Colson, Mark W. Grinstaff. \u201cIn Vitro Activity of Paclitaxel-Loaded Polymeric Expansile Nanoparticles in Breast Cancer Cells\u201d. <\/span>Biomacromolecules<\/span><\/i>. 14, 2074-2082 (2013). PMCID: PMC3915286.<\/span><\/p>\n

Harvey B.C.<\/b>, Lutchen K.R. \u201cFactors Determining Airway Caliber in Asthma\u201d. <\/span>Critical Reviews in Biomedical Engineering.<\/span><\/i> 41<\/b>(6): 515-32 (2013).<\/span><\/p>\n

Harvey B.C.<\/b>, Parameswaran H, Lutchen K.R. \u201cCan Tidal Breathing with Deep Inspirations of Intact Airways Create Sustained Bronchoprotection or Bronchodilation?\u201d <\/span>J Appl Physiol.<\/span><\/i> 115(4): 436-45 (2013).<\/span><\/p>\n

J. B. Schroeder<\/b>, J. T. Ritt. “Extraction of Intended Palpation Times from Facial EMGs in a Mouse Model of Active Sensing”. <\/span>Conf. Proc. IEEE Eng. Med. Biol. Soc.<\/span><\/i> 2013: 2016<\/span>\u2010<\/span>9 (2013).<\/span><\/p>\n

J. B. Schroeder<\/b>, V. J. Mariano, G. I. Telian, J. T. Ritt. \u201cStimulation of Somatosensory Cortex Locked to Whisker Motions in a Mouse Model of Active Sensing\u201d. <\/span>IEEE EMBS Conf. Proc. Neural Eng.<\/span><\/i> 2013: 637<\/span>\u2010<\/span>640 (2013).<\/span><\/p>\n

M. R. Monroe<\/b>, G. G. Daaboul, A. Tuysuzoglu, C. A. Lopez, F. F. Little, M. S. \u00dcnl\u00fc\u00a0“Single Nanoparticle Detection for Multiplexed Protein Diagnostics with Attomolar Sensitivity in Serum and Unprocessed Whole Blood”.\u00a0<\/span>Analytical Chemistry<\/span><\/i>. <\/span>85<\/b>(7): 3698-3706 (March\/April 2013).<\/span><\/p>\n

A. Reddington, <\/span>M. R. Monroe<\/b>, M. S. \u00dcnl\u00fc.\u00a0“Integrated Imaging Instrument for Self-Calibrated Fluorescence Protein Microarrays”.\u00a0<\/span>Review of Scientific Instruments<\/span><\/i>. <\/span>84<\/b>(10) (October 4, 2013).<\/span><\/p>\n

M. Cretich, <\/span>M. R. Monroe<\/b>, A. Reddington, X. Zhang, G. G. Daaboul, F. Damin, L. Sola, M. S. \u00dcnl\u00fc, M. Chiari. “Interferometric Silicon Biochips for Label and Label-Free DNA and Protein Microarrays”.\u00a0<\/span>Proteomics<\/span><\/i>. <\/span>12:<\/b> 2963-2977 (2013).<\/span><\/p>\n

Wachowiak M, <\/span>Economo MN<\/b>, Diaz-Quesada M, Brunert D, Wesson DW, White JA, Rothermal M. \u201cOptical Dissection of Odor Information Processing <\/span>in vivo<\/span><\/i> Using GCaMPs Expressed in Specific Cell Types of the Olfactory Bulb\u201d. <\/span>Journal of Neuroscience.<\/span><\/i> 33<\/b>: 5285-5300 (2013). PMCID: PMC3690468.<\/span><\/p>\n

Gurari, D., S-K Kim, E. Yang, B. Isenberg, <\/span>T. Pham<\/b>, A. Purwada, P. Solski, M. Walker, J.Y. Wong, M. Betke. \u201cSAGE: A Principled Approach and Implementation Empowering Quick and Reliable Quantitative Analysis of Segmentation Quality\u201d. <\/span>IEEE Workshop on the Applications of Computer Vision (WACV). <\/span><\/i>Clearwater Beach, Florida. pp. 475-481 (2013).<\/span><\/p>\n

Diego Alejandro Vargas<\/b>, Oliver Bates, Muhammad H. Zaman. \u201cComputational Model to Probe Cellular Mechanics During EMT\u201d. <\/span>Cells, Tissues, Organs.<\/span><\/i> (2013).<\/span><\/p>\n

Bernstein DB<\/b>, Nguyen B, Allen GB, Bates JH. (2013) Elucidating the fuzziness in physician decision making in ARDS. <\/span>J Clin Monit Comput.<\/span><\/i> 27: 357-363. (PMC3656147)<\/span><\/p>\n

Phinikaridou A, Hua N, <\/span>Pham T<\/b>, Hamilton JA (1 Mar 2013) Regions of low endothelial shear stress colocalize with positive vascular remodeling and atherosclerotic plaque disruption: an in vivo magnetic resonance imaging study <\/span>Circ Cardiovasc Imaging <\/span><\/i>6(2):302-10. (PMCID:<\/span> 23357244)<\/span><\/p>\n

Saphirstein RJ<\/b>, Gao YZ, Jensen MH, Gallant CM, Vetterkind S, Moore JR, Morgan KG. (2013 Apr 23) The focal adhesion: a regulated component of aortic stiffness. <\/span>PLoS One.<\/span><\/i> 8(4):e62461. doi:<\/span>10.1371\/journal.pone.0062461. (PMCID: PMC3633884)<\/span><\/p>\n

2012<\/strong><\/span><\/h3>\n

Dwyer DJ, Camacho DM, Kohanski MA, <\/span>Callura JM<\/b>, Collins JJ. \u201cAntibioticinduced bacterial cell death exhibits physiological and biochemical hallmarks of apoptosis\u201d. <\/span>Molecular Cell<\/span><\/i>. <\/span>46<\/b>: 561\u2013572 (2012).<\/span><\/p>\n

Callura JM<\/b>, Cantor CR, Collins JJ. \u201cGenetic switchboard for synthetic biology applications\u201d. <\/span>Proceedings of the National Academy of Sciences<\/span><\/i>. <\/span>109<\/b>: 5850\u20135855 (2012).<\/span><\/p>\n

Lee HH<\/b>, Collins JJ. \u201cMicrobial environments confound antibiotic efficacy\u201d. <\/span>Nature Chemical Biology<\/span><\/i>. <\/span>8<\/b>: 6\u20139 (2012).<\/span><\/p>\n

G. Seth Roberts, Sam Yu, Qinglu Zeng, Leslie C.L. Chan, Will Anderson, <\/span>Aaron H. Colby<\/b>, Mark W. Grinstaff, Steven Reid, Robert Vogel. \u201cTunable Pores for Measuring Concentrations of Synthetic and Biological Nanoparticle Dispersions\u201d. <\/span>Biosensors and Bioelectronics<\/span><\/i>. 31, 17-25 (2012). PMID: 22019099<\/span><\/p>\n

Steven R. Meyers<\/b>, Mark W. Grinstaff. \u201cBiocompatible and Bioactive Surface Modifications for Prolonged In vivo Efficacy\u201d. <\/span>Chemical Reviews.<\/span><\/i> 112, 1615\u20131632 (2012). PMCID: PMC3878818.<\/span><\/p>\n

Onkar V. Khullar, Aaron P. Griset, Summer L. Gibbs-Strauss, Lucian R. Chirieac, <\/span>Kimberly A. V. Zubris<\/b>, John V. Frangioni, Mark W. Grinstaff, Yolonda L. Colson. \u201cNanoparticle Migration and Delivery of Paclitaxel to Regional Lymph Nodes in a Large Animal Model\u201d. <\/span>Journal of the American College of Surgeons<\/span><\/i>. 214, 328-337 (2012). PMC: PMC3288886.<\/span><\/p>\n

Kimberly Ann V. Zubris<\/b>, Yolonda L. Colson, Mark W. Grinstaff. \u201cHydrogels as Intracellular Depots for Drug Delivery\u201d. <\/span>Molecular Pharmaceutics<\/span><\/i>. 9, 196-200 (2012). PMID: 22053709.<\/span><\/p>\n

K. P. Lillis<\/b>, M. A. Kramer, J. Mertz, K. J. Staley, J. A. White. “Pyramidal Cells Accumulate Chloride at Seizure Onset”. <\/span>Neurobio. of Disease.<\/span><\/i> 47, 358 (2012).<\/span><\/p>\n

E Larson, RK Maddox, <\/span>BP Perrone<\/b>, K Sen, CP Billimoria. \u201cNeuron-Specific Stimulus Masking Reveals Interference in Spike Timing at the Cortical Level\u201d. <\/span>Journal of the Association for Research in Otolaryngology.<\/span><\/i> 13<\/b>(1), 81-89 (2012).<\/span><\/p>\n

Maddox RK, Billimoria CP, <\/span>Perrone BP<\/b>, Shinn-Cunningham BG, Sen K. \u201cCompeting Sound Sources Reveal Spatial Effects in Cortical Processing\u201d. <\/span>PLoS Biology. <\/span><\/i>10<\/b>(5): e1001319 (2012). PMCID: PMC3341327.<\/span><\/p>\n

R. Krishnan, <\/span>E.P. Canovi\u0107<\/b>, A.L. Iordan, K. Rajendran, G. Manomohan, A.P. Pirentis, M.L. Smith, J.P. Butler, J.J. Fredberg, D. Stamenovi\u0107. \u201cFluidization, Resolidification, and Reorientation of the Endothelial Cell in Response to Slow Tidal Stretches\u201d. <\/span>Am J Physiol Cell Physiol<\/span><\/i>. <\/span>303<\/b>(4): C368-75 (2012).<\/span><\/p>\n

S.R. Polio<\/b>, K.E. Rothenberg, D. Stamenovi\u0107, M.L. Smith. \u201cA Micropatterning and Image Processing Approach to Simplify Measurement of Cellular Traction Forces\u201d. <\/span>Acta Biomater<\/span><\/i>. <\/span>8<\/b>(1): 82-8 (2012).<\/span><\/p>\n

P. S. Spuhler, L. Sola, X. Zhang,<\/span> M. R. Monroe<\/b>, J. T. Greenspun, M. Chiari, M. S. \u00dcnl\u00fc. “Precisely Controlled Smart Polymer Scaffold for Nanoscale Manipulation of Biomolecules”. Analytical Chemistry. 84: 10593\u201310599 (November 2012).<\/span><\/p>\n

Economo MN<\/b>, White JA. \u201cMembrane Properties and the Balance Between Excitation and Inhibition Control Gamma-Frequency Oscillations Arising from Feedback Inhibition\u201d. <\/span>PLoS Computational Biology.<\/span><\/i> 8<\/b>: e1002354 (2012). PMCID: PMC3261914.<\/span><\/p>\n

Kispersky TJ, Fernandez FR, <\/span>Economo MN<\/b>, White JA. \u201cSpike Resonance Properties in Hippocampal O-LM Cells are Dependent on Refractory Dynamics\u201d. <\/span>Journal of Neuroscience.<\/span><\/i> 32<\/b>: 3637-51 (2012). PCMID: PMC3316126.<\/span><\/p>\n

Smeal RM, <\/span>Economo MN<\/b>, Lillis KP<\/strong>, Wilcox KS, White JA. \u201cTargeted Path Scanning: An Emerging Method for Recording Fast Changing Network Dynamics Across Large Distances\u201d. <\/span>Journal of Bioengineering & Biomedical Science.<\/span><\/i> S5<\/b>: 002 (2012). PMCID: PMC3252263.<\/span><\/p>\n

Isenberg, B.C., <\/span>D.E. Backman<\/b>, M.E. Kinahan, R. Jesudason, B. Suki, P.J. Stone, E.C. Davis, J.Y. Wong. \u201cMicropatterned Cell Sheets with Defined Cell and Extracellular Matrix Orientation Exhibit Anisotropic Mechanical Properties\u201d. <\/span>J Biomechanics.<\/span><\/i> 45<\/b>: 756-761 (2012).<\/span><\/p>\n

Williams, C.<\/b>, A. Xie, S. Emani, M. Yamato, T. Okano, S.M. Emani, J.Y. Wong. \u201cA Comparison of Human Smooth Muscle and Mesenchymal Stem Cells as Potential Cell Sources for Tissue Engineered Vascular Patches\u201d. <\/span>Tissue Engineering Part A.<\/span><\/i> 18<\/b>(9-10): 986-998 (2012).<\/span><\/p>\n

Joe Maffei<\/b>, Muhammad H. Zaman. \u201c<\/span>Quantifying Cell-ECM Pathobiology in 3D<\/span><\/i>\u201d. In \u201cExtracellular Matrix Pathobiology and Signaling\u201d. Karamanos Editor. De Gruyter Press. (2012).<\/span><\/p>\n

Brian Fallica, <\/span>Joe Maffei<\/b>, Shaun Villa, Guy Makin, Muhammad H. Zaman. \u201cAlteration of Cellular Behavior and Response to PI3K Pathway Inhibition by Culture in 3D Collagen Gels\u201d. <\/span>PLoS ONE.<\/span><\/i> 7<\/b>(10): e48024 (2012).<\/span><\/p>\n

Persans PD, Berry NE, Recht D, Hutchinson D, <\/span>Peterson H<\/b>, et. al.\u00a0 (2012) \u201cPhotocarrier lifetime and transport in silicon supersaturated with sulfur\u201d.\u00a0 <\/span>Applied Physics Letters<\/span><\/i>.\u00a0 101, 111105; doi 10.1063\/1.4746752<\/span><\/p>\n

2011<\/strong><\/span><\/h3>\n

Prashant N. Bansal, <\/span>Rachel C. Stewart<\/b>, Vahid Entezari, Brian D. Snyder, Mark W. Grinstaff. \u201cContrast Agent Electrostatic Attraction Rather than Repulsion To Glycosaminoglycans Affords a Greater Contrast Uptake Ratio and Improved Quantitative CT Imaging in Cartilage\u201d. <\/span>Osteoarthritis and Cartilage<\/span><\/i>. 19, 970-976 (2011). PMID: 21549206.<\/span><\/p>\n

Neel S. Joshi, Prashant N. Bansal, Bethany C. Malone, Vahid Entezari, <\/span>Rachel C. Stewart<\/b>, Brian D. Snyder, Mark W. Grinstaff. \u201cCationic Contrast Agents Improve Quantification of Glycosaminoglycan (GAG) Content by Contrast Enhanced CT Imaging of Cartilage\u201d. <\/span>Journal of Orthopaedic Research. <\/span><\/i>29, 704-709 (2011). \u00a0PMID: 21437949.<\/span><\/p>\n

Steven R. Meyers<\/b>, Daniel J. Kenan, Xiaojuan Khoo, Mark W. Grinstaff. \u201cBioactive Stent Surface Coating that Promotes Endothelialization While Preventing Platelet Adhesion\u201d. <\/span>Biomacromolecules<\/span><\/i>. 12, 533-539 (2011). PMCID: PMC3064855.<\/span><\/p>\n

CS Mulvey, K Zhang, <\/span>WHB Liu<\/b>, DJ Waxman, IJ Bigio. \u201cWavelength-dependent backscattering measurements for quantitative monitoring of apoptosis – Part I: early and late spectral changes are indicative of the presence of apoptosis in cell cultures\u201d. <\/span>J. Biomedical Optics.<\/span><\/i> 16<\/b>(11), 117001 (2011). PMCID: PMC3221717.<\/span><\/p>\n

CS Mulvey, K Zhang, <\/span>WHB Liu<\/b>, DJ Waxman, IJ Bigio. \u201cWavelength-dependent backscattering measurements for quantitative monitoring of apoptosis – Part II: Early spectral changes during apoptosis are linked to apoptotic volume decrease\u201d. <\/span>J. Biomedical Optics.<\/span><\/i> 16<\/b>(11), 117002 (2011). PMCID: PMC3221718.<\/span><\/p>\n

Morgan D. Schulz, <\/span>Kimberly Ann V. Zubris<\/b>, Jacqueline E. Wade, Robert F. Padera, Xiaoyin Xu, Mark W. Grinstaff, Yolonda L. Colson. \u201cPaclitaxel-loaded Expansile Nanoparticles in a Multimodality Treatment Model of Malignant Mesothelioma\u201d. <\/span>Annals of Thoracic Surgery.<\/span><\/i> 92, 2007-2014 (2011). PMID: 21963198.<\/span><\/p>\n

Rong Liu, Onkar V. Khullar, Aaron P. Griset, Jacqueline E. Wade, <\/span>Kimberly Ann V. Zubris<\/b>, Mark W. Grinstaff, Yolonda L. Colson.<\/span>.<\/span> \u201cPaclitaxel-loaded Expansile Nanoparticles Delay Local Recurrence in a Heterotopic Murine NSCLC Model\u201d. <\/span>Annals of Thoracic Surgery.<\/span><\/i> 91, 1077-1084 (2011). PMID: 21440127.<\/span><\/p>\n

Yolonda L. Colson, Rong Liu, Emily B. Southard, Morgan D. Schulz, Jacqueline E. Wade, Aaron P. Griset, <\/span>Kimberly Ann V. Zubris<\/b>, Robert F. Padera, Mark W. Grinstaff. \u201cThe Performance of Expansile Nanoparticles in a Murine Model of Peritoneal Carcinomatosis\u201d. <\/span>Biomaterials.<\/span><\/i> 32, 832-840 (2011). PMID: 21044799.<\/span><\/p>\n

Mendonca NT, Kenyon J, <\/span>LaPrad<\/b> AS<\/b>, Syeda SN, O\u2019Connor GT, Lutchen KR. \u00a0\u201cAirway resistance at maximum inhalation as a marker of asthma and airway hyperresponsiveness\u201d. <\/span>Respiratory Research.<\/span><\/i> 12: 96 (2011).<\/span><\/p>\n

LaPrad AS<\/b>, Lutchen KR. Invited Editorial: \u201cThe Dissolution of Intact Airway Responsiveness from Breathing Fluctuations – What Went Wrong?\u201d <\/span>J Appl Physiol. <\/span><\/i>110<\/b>(6):1506-7 (2011).<\/span><\/p>\n

Pirentis AP, <\/span>Peruski E<\/b>, Iordan AL, Stamenovi\u0107 D. \u201cA Model of Stress Fiber Realignment Caused by Cytoskeletal Fluidization During Cyclic Stretching\u201d. <\/span>Cell Mol Bioeng. <\/span><\/i>4: 67-80 (2011). PMCID: PMC3109752.<\/span><\/p>\n

C. A. Lopez, G. G. Daaboul, S. Ahn, A. Reddington, <\/span>M. R. Monroe<\/b>, X. Zhang, R. Irani, C. Yu, C. A. Genco, M. Cretich, M. Chiari, B. B. Goldberg, J. H. Connor, M. S. \u00dcnl\u00fc\u00a0“Biomolecular Detection Employing the Interferometric Reflectance Imaging Sensor (IRIS)”.\u00a0<\/span>Journal of Visualized Experiments<\/span><\/i>. 51 (May 2011).<\/span><\/p>\n

M. Cretich, A. Reddington, <\/span>M. R. Monroe<\/b>, M. Bagnati, F. Damin, L. Sola, M. S. \u00dcnl\u00fc, M. Chiari.\u00a0“Silicon Biochips for Dual Label-Free and Fluorescence Detection: Application to Protein Microarray Development”.\u00a0<\/span>Biosensors and Bioelectronics<\/span><\/i>. <\/span>26<\/b>(9): 3938-3943 (May 2011).<\/span><\/p>\n

M. R. Monroe<\/b>, A. Reddington, A. D. Collins, C. D. Laboda, M. Cretich, M. Chiari, F. F. Little, M. S. \u00dcnl\u00fc. “Multiplexed Method to Calibrate and Quantitate Fluorescence Signal for Allergen-Specific IgE”. Analytical Chemistry. (November 2011).<\/span><\/p>\n

Kispersky TJ, <\/span>Economo MN<\/b>, Randeria P, White JA. \u201cGenNet: A Platform for Hybrid Network Experiments\u201d. <\/span>Frontiers in Neuroinformatics<\/span><\/i> 5<\/b>:11 (2011). PMCID: PMC3146038.<\/span><\/p>\n

Williams, C.<\/b>, X.Q. Brown, E. Bartolak-Suki, H. Ma, A. Chilkoti, J.Y. Wong. \u201cThe Use of Micropatterning to Control Smooth Muscle Myosin Heavy Chain Expression and Limit the Response to Transforming Growth Factor Beta-1 in Vascular Smooth Muscle Cells\u201d. <\/span>Biomaterials. <\/span><\/i>32<\/b>: 410-418 (2011). PMCID: PMC2991379.<\/span><\/p>\n

Williams, C.<\/b>, A. Xie, M. Yamato, T. Okano, J.Y. Wong. \u201cStacking of Aligned Cell Sheets for Layer-by-Layer Control of Complex Tissue Structure\u201d. <\/span>Biomaterials.<\/span><\/i> 32<\/b>: 5625-5632 (2011).<\/span><\/p>\n

Dewi Harjanto, <\/span>Joe Maffei<\/b>, Muhammad H. Zaman. \u201cQuantitative Analysis of the Effect of Cancer Invasiveness and Collagen Concentration on 3D Matrix Remodeling\u201d. <\/span>PLoS One.<\/span><\/i> 6<\/b>(9): e24891 (2011).<\/span><\/p>\n

Diego Alejandro Vargas<\/b>, Muhammad H. Zaman. \u201cA Computational Model for Migration of a Cell-Cluster in Three Dimensional Matrices\u201d. <\/span>Annals of Biomedical Engineering.<\/span><\/i> 39<\/b>(7): 2068-79 (2011).\u00a0<\/span><\/p>\n

2010<\/strong><\/span><\/h3>\n

Kimberly Ann V. Zubris<\/b>, Onkar Khullar,<\/span> Aaron P. Griset, Summer Gibbs-Strauss,<\/span> John V. Frangioni, Yolonda L. Colson, Mark W. Grinstaff. \u201cEase of Synthesis, Controllable Sizes, and In vivo Large-Animal-Lymph Migration of Polymeric Nanoparticles\u201d. <\/span>ChemMedChem.<\/span><\/i> 5, 1435-1438 (2010). PMID: 20593440.<\/span><\/p>\n

Lee HH<\/b>, Molla MN, Cantor CR, Collins JJ. \u201cBacterial charity work leads to populationwide resistance\u201d. <\/span>Nature.<\/span><\/i> 467<\/b>: 82\u201385 (2010).<\/span><\/p>\n

TR Jennings<\/b>, HS Colburn. \u201cModels of the superior olivary complex\u201d <\/span>Computational Models of the Auditory System.<\/span><\/i> 65-96 (2010).<\/span><\/p>\n

Callura JM<\/b>, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ. \u201cTracking, tuning, and terminating microbial physiology using synthetic riboregulators\u201d. <\/span>Proceedings of the National Academy of Sciences USA<\/span><\/i>. <\/span>107<\/b>: 15898\u201315903 (2010).<\/span><\/p>\n

LaPrad AS<\/b>, Szabo TL, Suki B, and Lutchen KR. \u201cTidal stretches do not modulate responsiveness of intact airways in-vitro\u201d. <\/span>J Appl Physiol.<\/span><\/i> 109<\/b>(2): 295-304 (2010). <\/span><\/p>\n

LaPrad AS<\/b>, Szabo TL, Suki B, Lutchen KR. Letter to the Editor: \u201cThe Pressure-Controlled Intact Airway System as a Powerful Tool in Unraveling the Mystery of Airway Hyperresponsiveness\u201d. <\/span>J Appl Physiol.<\/span><\/i> 109<\/b>(3): 940-941 (2010).<\/span><\/p>\n

E Larson, <\/span>BP Perrone<\/b>, K Sen, CP Billimoria. \u201cA Robust and Biologically Plausible Spike Pattern Recognition Network\u201d. <\/span>The Journal of Neuroscience.<\/span><\/i> 30<\/b>(46), 15566-15572 (2010).<\/span><\/p>\n

Economo MN<\/b>, Fernandez FR, White JA. \u201cDynamic Clamp: Alteration of Response Properties and Creation of Virtual Realities in Neurophysiology\u201d. <\/span>Journal of Neuroscience.<\/span><\/i> 30<\/b>: 2407-2413 (2010).<\/span><\/p>\n

Brown, X., E. Bartolak-Suki, <\/span>C. Williams<\/b>, M. Walker, V.M. Weaver, J.Y. Wong. \u201cEffect of Substrate Stiffness and PDGF on the Behavior of Vascular Smooth Muscle Cells: Implications for Atherosclerosis\u201d. <\/span>Journal of Cellular Physiology.<\/span><\/i> 225<\/b>: 115-122 (2010). PMCID: PMC2920297.<\/span><\/p>\n

2009<\/strong><\/span><\/h3>\n

Neel S. Joshi, Prashant N. Bansal, <\/span>Rachel C. Stewart<\/b>, Brian D. Snyder, Mark W. Grinstaff. \u201cEffect of Contrast Agent Charge on Visualization of Articular Cartilage Using Computed Tomography:\u00a0 Exploiting Electrostatic Interactions for Improved Sensitivity\u201d. <\/span>Journal of the American Chemical Society.<\/span><\/i> 131, 13234-13235 (2009). PMID: 19754183.<\/span><\/p>\n

GD Grana<\/b>, CP Billimoria, K Sen. \u201cAnalyzing variability in neural responses to complex natural sounds in the awake songbird\u201d. <\/span>Journal of Neurophysiology.<\/span><\/i> 101<\/b>(6): 3147-3157 (2009).<\/span><\/p>\n

Keck T<\/b>, White JA. \u201cGlycinergic Inhibition in the Hippocampus\u201d. <\/span>Reviews in the Neurosciences.<\/span><\/i> 20<\/b>: 13-22 (2009).<\/span><\/p>\n

Williams, C.<\/b>, Y. Tsuda, B.C. Isenberg, M. Yamato, T. Shimizu, T. Okano, J.Y. Wong. \u201cAligned Cell Sheets Grown on Thermo-Responsive Substrates with Micro-Contact Printed Protein Patterns\u201d. <\/span>Advanced Materials.<\/span><\/i> 21<\/b>(21): 2161-2164 (2009, Epub October 9, 2008).<\/span><\/p>\n

Williams, C.<\/b>, J. Liao, E.M. Joyce, J.B. Leach, M.S. Sacks, J.Y. Wong. \u201cAltered Structural and Mechanical Properties in Decellularized Rabbit Carotid Arteries\u201d. <\/span>Acta Biomaterialia.<\/span><\/i> 5<\/b>(4): 993-1005 (2009). PMCID: PMC2680318.<\/span><\/p>\n

Diego A. Vargas<\/b>, Muhammad H. Zaman. \u201cSerine at Phosphorylation Site Regulates the Mechanical and Structural Behavior of Fascin\u201d. <\/span>Cellular and Molecular Bioengineering.<\/span><\/i> 2<\/b>(4): 504-513 (2009).\u00a0<\/span><\/p>\n

2008<\/strong><\/span><\/h3>\n

Steven R. Meyers<\/b>, Frank S. Juhn, Aaron P. Griset, Nathanael R. Luman, <\/span>Mark W. Grinstaff. \u201cAnionic Amphiphilic Dendrimers as Antibacterial Agents\u201d. <\/span>Journal of the American Chemical Society<\/span><\/i>. 130, 14444\u201314445 (2008). PMCID: PMC2673084.<\/span><\/p>\n

Steven R. Meyers<\/b>, Daniel J. Kenan, and Mark W. Grinstaff. \u201cEnzymatic Release of Surface Adsorbed RGD Therapeutic from a Cleavable Peptide Anchor\u201d. <\/span>ChemMedChem<\/span><\/i>. 3, 1645 \u2013 1648 (2008). PMID: 18792896.<\/span><\/p>\n

LaPrad AS<\/b>, West AR, Noble PB, Lutchen KR, Mitchell HW. \u201cMaintenance of Airway Caliber in Isolated Airways by Deep Inspiration and Tidal Strains\u201d. <\/span>J Appl Physiol. <\/span><\/i>105: 479-485 (2008).<\/span><\/p>\n

LaPrad AS<\/b>, Lutchen KR. Invited Review: \u201cRespiratory Impedance Measurements for Assessment of Lung Mechanics: Focus on Asthma\u201d. <\/span>Respir Physiol Neurobiol. <\/span><\/i>163: 64-73 (2008).<\/span><\/p>\n

K.P. Lillis<\/b>, A. Eng, J. A. White, J. Mertz. “Two Photon Imaging of Spatially Extended Neuronal Network Dynamics with High Temporal Resolution”. <\/span>J. Neurosci. Meth.<\/span><\/i> 172, 178 (2008).<\/span><\/p>\n

CP Billimoria, <\/span>BJ Kraus<\/b>, R Narayan, RK Maddox, K Sen. \u201cInvariance and Sensitivity to Intensity in Neural Discrimination of Natural Sounds\u201d. <\/span>The Journal of Neuroscience. <\/span><\/i>28<\/b>(25), 6304-6308 (2008).<\/span><\/p>\n

Burton BG, <\/span>Economo MN<\/b>, Lee J, White JA. \u201cDevelopment of Theta Rhythmicity in Entorhinal Stellate Cells of the Juvenile Rat\u201d. <\/span>Journal of Neurophysiology.<\/span><\/i> 100<\/b>: 3144-3157 (2008).<\/span><\/p>\n

Keck T<\/b>, Lillis KP<\/strong>, Zhou YD, White JA. \u201cFrequency-Dependent Glycinergic Inhibition Modulates Plasticity in Hippocampus\u201d. <\/span>Journal of Neuroscience.<\/span><\/i> 28<\/b>: 7359-7369 (2008).<\/span><\/p>\n

Bettencourt JC, <\/span>Lillis KP<\/b>, Stupin L, White JA. \u201cEffects of Imperfect Dynamic Clamp: Computational and Experimental Results\u201d. <\/span>Journal of Neuroscience Methods.<\/span><\/i> 169<\/b>: 282-289 (2008).<\/span><\/p>\n

Isenberg, B.C., Y. Tsuda, <\/span>C. Williams<\/b>, T. Shimizu, M. Yamato, T. Okano, J.Y. Wong. \u201cA Thermoresponsive, Microtextured Substrate for Cell Sheet Engineering with Defined Structural Organization\u201d. <\/span>Biomaterials.<\/span><\/i> 29<\/b>(17): 2565-72 (2008). PMCID: PMC2673468.<\/span><\/p>\n

2007<\/strong><\/span><\/h3>\n

Steven R. Meyers<\/b>, Paul T. Hamilton, Elisabeth B. Walsh, Daniel J. Kenan, Mark W. Grinstaff. \u201cEndothelialization of Titanium Surfaces.\u201d <\/span>Advanced Materials<\/span><\/i>. 19, 2492-2498 (2007).<\/span><\/p>\n

Kohanski MA, Dwyer DJ, Hayete B, <\/span>Lawrence CA, <\/b>Collins JJ. \u201cA common mechanism of cellular death induced by bactericidal antibiotics\u201d. <\/span>Cell.<\/span><\/i> 130<\/b>: 797\u2013810 (2007).<\/span><\/p>\n

Ergun A, <\/span>Lawrence CA<\/b>, Kohanski MA, Brennan TA, Collins JJ. \u201cA network biology approach to prostate cancer\u201d. <\/span>Molecular Systems Biology<\/span><\/i>. <\/span>3<\/b>: 88 (2007).<\/span><\/p>\n

Wang L, Narayan R, <\/span>Grana G<\/b>, Shamir M, Sen K. \u201cCortical Discrimination of Complex Natural Stimuli: Can Single Neurons Match Behavior?\u201d <\/span>Journal of Neuroscience.<\/span><\/i> 27<\/b>(3): 582\u201389 (2007).<\/span><\/p>\n

2006<\/strong><\/span><\/h3>\n

Daniel J. Kenan, Elisabeth B. Walsh, <\/span>Steven R. Meyers<\/b>, George A. O\u2019Toole, Erin G. Carruthers, Woo K. Lee, Stefan Zauscher, Carla A. H. Prata, Mark W. Grinstaff. \u201cPeptide-PEG Amphiphiles as Cytophobic Coatings for Mammalian and Bacterial Cells.\u201d <\/span>Chemistry and Biology.<\/span><\/i> 13, 695-700 (2006). PMID: 16873017.<\/span><\/p>\n

Narayan R, <\/span>Grana G<\/b>, Sen K. \u201cDistinct Time-Scales in Cortical Discrimination of Natural Sounds in Songbirds\u201d. <\/span>Journal of Neurophysiology<\/span><\/i>. 96: 252-258 (2006).<\/span><\/p>\n

2004<\/strong><\/span><\/h3>\n

Netoff TI, Clewley R, Arno S, <\/span>Keck T<\/b>, White JA. \u201cEpileptiform Behavior in Small World Networks\u201d. <\/span>Journal of Neuroscience.<\/span><\/i> 24<\/b>: 8075-8083 (2004).<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

2025 Y\u00fccel, M.A., Anderson, J.E., Rogers, D., Hajirahimi, P., Farzam, P., Gao, Y., Kaplan, R.I., Braun, E.J., Mukadam, N., Duwadi, S., Carlton, L., Beeler, D., Butler, L.K., Carpenter, E., Girnis, J., Wilson, J., Tripathi, V., Zhang, Y., Sorger, B., von L\u00fchmann, A., Somers, D.C., Cronin-Golomb, A., Kiran, S., Ellis, T.D., Boas, D.A., 2025. Quantifying the […]<\/p>\n","protected":false},"author":11863,"featured_media":0,"parent":0,"menu_order":8,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/pages\/299"}],"collection":[{"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/users\/11863"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/comments?post=299"}],"version-history":[{"count":10,"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/pages\/299\/revisions"}],"predecessor-version":[{"id":940,"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/pages\/299\/revisions\/940"}],"wp:attachment":[{"href":"https:\/\/www.bu.edu\/qbp\/wp-json\/wp\/v2\/media?parent=299"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}