Neurophotonics Center Publications in 2019 (up to May)

List of NPC Faculty publication 2019 (compiled on Google Scholar)

David Boas

Tahir W, Zhu J, Kura S, Cheng X, Boas D, Tian L. 2019. A Deep Learning Approach to 3D Segmentation of Brain Vasculature. In: Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP). Optical Society of America. p. BT2A.6.

Moeini M, Lu X, Belanger S, Picard F, Boas D, Kakkar A, Lesage F. 2019. Cerebral tissue pO2 response to stimulation is preserved with age in awake mice. Neurosci Lett. 699:160–166.

Tamborini D, Stephens K, Wu M, Farzam P, Siegel A, Shatrovoy O, Blackwell M, Boas D, Carp S, Franceschini MA. 2019 Feb. Portable system for Time-Domain Diffuse Correlation Spectroscopy. IEEE Trans Biomed Eng.

Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. 2019. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann’s area 32 and area 21. Brain Struct Funct. 224(1):351–362.

Thomas Bifano

Pollock C, Barrett LK, del Corro PG, Stange A, Bifano TG, Bishop DJ. 2019. PWM as a Low Cost Method for the Analog Control of MEMS Devices. J Microelectromechanical Syst.

Irving Bigio

Sharaha U, Rodriguez-Diaz E, Sagi O, Riesenberg K, Salman A, Bigio IJ, Huleihel M. 2019 Mar. Fast and reliable determination of Escherichia coli susceptibility to antibiotics: Infrared microscopy in tandem with machine learning algorithms. J Biophotonics.:e201800478.

Alice Cronin-Golomb

Reynolds GO, Saint-Hilaire M, Thomas CA, Barlow DH, Cronin-Golomb A. 2019 Mar. Cognitive-Behavioral Therapy for Anxiety in Parkinson’s Disease. Behav Modif.: 145445519838828.

Salazar RD, Weizenbaum E, Ellis TD, Earhart GM, Ford MP, Dibble LE, Cronin-Golomb A. 2019. Predictors of self-perceived stigma in Parkinson’s disease. Parkinsonism Relat Disord. 60:76–80.

Ian Davison

Besnard A, Gao Y, TaeWoo Kim M, Twarkowski H, Reed AK, Langberg T, Feng W, Xu X, Saur D, Zweifel LS, et al. 2019. Dorsolateral septum somatostatin interneurons gate mobility to calibrate context-specific behavioral fear responses. Nat Neurosci. 22(3):436–446.

Allison Dennis

Chern M, Kays JC, Bhuckory S, Dennis AM. 2019. Sensing with photoluminescent semiconductor quantum dots. Methods Appl Fluoresc. 7(1):12005.

Johnson CA, Chern M, Nguyen TT, Dennis AM, Goldfarb JL. 2019. Ligands and media impact interactions between engineered nanomaterials and clay minerals. NanoImpact. 13:112–122.

Kunkle BW, Grenier-Boley B, Sims R, Bis JC, Damotte V, Naj AC, Boland A, Vronskaya M, van der Lee SJ, Amlie-Wolf A, et al. 2019. Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Abeta, tau, immunity and lipid processing. Nat Genet. 51(3):414–430.

Chris Gabel

Badon A, Bensussen S, Gritton HJ, Awal MR, Gabel C V., Han X, Mertz J. 2019. Video-rate large-scale imaging with Multi-Z confocal microscopy. Optica. 6(4):389.

Lee Goldstein

Chancellor SE, Franz ES, Minaeva O V., Goldstein LE. 2019 Mar 23. Pathophysiology of Concussion. Semin Pediatr Neurol.

Xue Han

Badon A, Bensussen S, Gritton HJ, Awal MR, Gabel C V., Han X, Mertz J. 2019. Video-rate large-scale imaging with Multi-Z confocal microscopy. Optica. 6(4):389.

Gritton HJ, Howe WM, Romano MF, DiFeliceantonio AG, Kramer MA, Saligrama V, Bucklin ME, Zemel D, Han X. 2019. Unique contributions of parvalbumin and cholinergic interneurons in organizing striatal networks during movement. Nat Neurosci. 22(4):586–597.

James NM, Gritton HJ, Kopell N, Sen K, Han X. 2019. Muscarinic receptors regulate auditory and prefrontal cortical communication during auditory processing. Neuropharmacology. 144:155–171.

Nocera AL, Mueller SK, Stephan JR, Hing L, Seifert P, Han X, Lin DT, Amiji MM, Libermann T, Bleier BS. 2019. Exosome swarms eliminate airway pathogens and provide passive epithelial immunoprotection through nitric oxide. J Allergy Clin Immunol. 143(4):1525-1535.e1.

Romano M, Bucklin M, Gritton H, Mehrotra D, Kessel R, Han X. 2019. A Teensy microcontroller-based interface for optical imaging camera control during behavioral experiments. J Neurosci Methods. 320:107–115. doi:10.1016/j.jneumeth.2019.03.019.

Michael Hasselmo

Dannenberg H, Kelley C, Hoyland A, Monaghan CK, Hasselmo ME. 2019 Feb. The firing rate speed code of entorhinal speed cells differs across behaviorally relevant time scales and does not depend on medial septum inputs. J Neurosci.

Liu Y, Tiganj Z, Hasselmo ME, Howard MW. 2019. A neural microcircuit model for a scalable scale-invariant representation of time. Hippocampus. 29(3):260–274.

Mark Howe

Howe M, Ridouh I, Allegra ALM, Larios A, Azcorra MS, Dombeck D. 2019. Coordination of rapid cholinergic and dopaminergic signaling in striatum during spontaneous movement. Elife. 8.

Melissa Kibbe

Kibbe MM, Leslie AM. 2019. Conceptually Rich, Perceptually Sparse: Object Representations in 6-Month-Old Infants’ Working Memory. Psychol Sci. 30(3):362–375.

Applin JB, Kibbe MM. Six-Month-Old Infants Predict Agents’ Goal-Directed Actions on Occluded Objects. Infancy.

St John AM, Kibbe M, Tarullo AR. 2019. A systematic assessment of socioeconomic status and executive functioning in early childhood. J Exp Child Psychol. 178:352–368.

Swathi Kiran

Europa E, Gitelman DR, Kiran S, Thompson CK. 2019. Neural Connectivity in Syntactic Movement Processing. Front Hum Neurosci. 13:27.

Gilmore N, Meier EL, Johnson JP, Kiran S. 2019 Jan. Nonlinguistic Cognitive Factors Predict Treatment-Induced Recovery in Chronic Poststroke Aphasia. Arch Phys Med Rehabil.

Godlove J, Anantha V, Advani M, Des Roches C, Kiran S. 2019. Comparison of Therapy Practice at Home and in the Clinic: A Retrospective Analysis of the Constant Therapy Platform Data Set. Front Neurol. 10:140.

Johnson JP, Ross K, Kiran S. 2019. Multi-step treatment for acquired alexia and agraphia (Part I): efficacy, generalisation, and identification of beneficial treatment steps. Neuropsychol Rehabil. 29(4):534–564.

Kiran S, Thompson CK. 2019. Neuroplasticity of Language Networks in Aphasia: Advances, Updates, and Future Challenges. Front Neurol. 10:295.

Ross K, Johnson JP, Kiran S. 2019. Multi-step treatment for acquired alexia and agraphia (part II): a dual-route error scoring system. Neuropsychol Rehabil. 29(4):565–604.

Wallace SJ, Worrall L, Rose T, Le Dorze G, Breitenstein C, Hilari K, Babbitt E, Bose A, Brady M, Cherney LR, et al. 2019. A core outcome set for aphasia treatment research: The ROMA consensus statement. Int J Stroke. 14(2):180–185.

Jerome Mertz

Badon A, Bensussen S, Gritton HJ, Awal MR, Gabel C V., Han X, Mertz J. 2019. Video-rate large-scale imaging with Multi-Z confocal microscopy. Optica. 6(4):389.

Siddharth Ramachandran

Johnson SD, Phillips DB, Ma Z, Ramachandran S, Padgett MJ. 2019. A light-in-flight single-pixel camera for use in the visible and short-wave infrared. Opt Express. 27(7):9829–9837.

Antikainen A, Rishoj L, Tai B, Ramachandran S, Agrawal GP. 2019. Fate of a Soliton in a High Order Spatial Mode of a Multimode Fiber. Phys Rev Lett. 122(2):23901.

Balaswamy V, Aparanji S, Arun S, Ramachandran S, Supradeepa VR. 2019. High-power, widely wavelength tunable, grating-free Raman fiber laser based on filtered feedback. Opt Lett. 44(2):279–282.

Rishøj L, Tai B, Kristensen P, Ramachandran S. 2019. Soliton self-mode conversion: revisiting Raman scattering of ultrashort pulses. Optica. 6(3):304–308.

Prabhakar G, Gregg P, Rishoj L, Kristensen P, Ramachandran S. 2019. Octave-wide supercontinuum generation of light-carrying orbital angular momentum. Opt Express. 27(8):11547.

Balaswamy V, Ramachandran S, Supradeepa VR. 2019. High-power, cascaded random Raman fiber laser with near complete conversion over wide wavelength and power tuning. Opt Express. 27(7):9725.

Yan L, Kristensen P, Ramachandran S. 2019. Vortex fibers for STED microscopy. APL Photonics. 4(2):22903.

Demas J, Rishøj L, Liu X, Prabhakar G, Ramachandran S. 2019. Intermodal group-velocity engineering for broadband nonlinear optics. Photonics Res. 7(1):1–7.

Darren Roblyer

Karrobi K, Tank A, Tabassum S, Pera V, Roblyer D. 2019 Jan. Diffuse and nonlinear imaging of multiscale vascular parameters for in vivo monitoring of preclinical mammary tumors. J Biophotonics.:e201800379.

Bungart B, Cao Y, Yang-Tran T, Gorsky S, Lan L, Roblyer D, Koch MO, Cheng L, Masterson T, Cheng J-X. 2019. Cylindrical illumination with angular coupling for whole-prostate photoacoustic tomography. Biomed Opt Express. 10(3):1405–1419.

Michelle Sander

Samolis PD, Sander MY. 2019. Phase-sensitive lock-in detection for high-contrast mid-infrared photothermal imaging with sub-diffraction limited resolution. Opt Express. 27(3):2643–2655.

Kamal Sen

James NM, Gritton HJ, Kopell N, Sen K, Han X. 2019. Muscarinic receptors regulate auditory and prefrontal cortical communication during auditory processing. Neuropharmacology. 144:155–171.

Barbara Shinn-Cunningham

Wang L, Bharadwaj H, Shinn-Cunningham B. 2019 Mar. Assessing Cochlear-Place Specific Temporal Coding Using Multi-Band Complex Tones to Measure Envelope-Following Responses. Neuroscience.

Bharadwaj HM, Mai AR, Simpson JM, Choi I, Heinz MG, Shinn-Cunningham BG. 2019 Mar. Non-Invasive Assays of Cochlear Synaptopathy – Candidates and Considerations. Neuroscience.

Lim S-J, Shinn-Cunningham BG, Perrachione TK. 2019 Feb. Effects of talker continuity and speech rate on auditory working memory. Atten Percept Psychophys.

David Somers

Brissenden JA, Tobyne SM, Osher DE, Levin EJ, Halko MA, Somers DC. 2018. Topographic Cortico-cerebellar Networks Revealed by Visual Attention and Working Memory. Curr Biol. 28(21):3364-3372.e5.

Tobyne SM, Somers DC, Brissenden JA, Michalka SW, Noyce AL, Osher DE. 2018. Prediction of individualized task activation in sensory modality-selective frontal cortex with “connectome fingerprinting”. Neuroimage. 183:173–185.

Robert Stern

Alosco ML, Tripodis Y, Rowland B, Chua AS, Liao H, Martin B, Jarnagin J, Chaisson CE, Pasternak O, Karmacharya S, et al. 2019 Mar. A magnetic resonance spectroscopy investigation in symptomatic former NFL players. Brain Imaging Behav.

Stern RA, Adler CH, Chen K, Navitsky M, Luo J, Dodick DW, Alosco ML, Tripodis Y, Goradia DD, Martin B, et al. 2019 Apr. Tau Positron-Emission Tomography in Former National Football League Players. N Engl J Med.

Sugarman MA, McKee AC, Stein TD, Tripodis Y, Besser LM, Martin B, Palmisano JN, Steinberg EG, O’Connor MK, Au R, et al. 2019 Mar. Failure to detect an association between self-reported traumatic brain injury and Alzheimer’s disease neuropathology and dementia. Alzheimers Dement.

Helen Tager-Flusberg

Plesa Skwerer D, Joseph RM, Eggleston B, Meyer SR, Tager-Flusberg H. 2019. Prevalence and Correlates of Psychiatric Symptoms in Minimally Verbal Children and Adolescents With ASD. Front psychiatry. 10:43.

Kadlaskar G, Seidl A, Tager-Flusberg H, Nelson CA, Keehn B. 2019 Apr. Atypical Response to Caregiver Touch in Infants at High Risk for Autism Spectrum Disorder. J Autism Dev Disord.

Jones RM, Plesa Skwerer D, Pawar R, Hamo A, Carberry C, Ajodan EL, Caulley D, Silverman MR, McAdoo S, Meyer S, et al. 2019. How effective is LENA in detecting speech vocalizations and language produced by children and adolescents with ASD in different contexts? Autism Res. 12(4):628–635.

Iverson JM, Shic F, Wall CA, Chawarska K, Curtin S, Estes A, Gardner JM, Hutman T, Landa RJ, Levin AR, et al. 2019. Early motor abilities in infants at heightened versus low risk for ASD: A Baby Siblings Research Consortium (BSRC) study. J Abnorm Psychol. 128(1):69–80.

Choi B, Shah P, Rowe ML, Nelson CA, Tager-Flusberg H. 2019 Mar. Gesture Development, Caregiver Responsiveness, and Language and Diagnostic Outcomes in Infants at High and Low Risk for Autism. J Autism Dev Disord.

Lei Tian

Sun Y, Xu S, Li Y, Tian L, Wohlberg B, Kamilov US. 2019. Regularized Fourier Ptychography using an Online Plug-and-Play Algorithm. In: ICASSP 2019-2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). p. 7665–7669.

Matlock A, Yi J, Tian L. 2019. Multiplexed Intensity Diffraction Tomography (mIDT) for Dynamic, Label-Free Volumetric Biological Imaging. In: Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP). Optical Society of America. p. JW4C.2.

John Andrew White

Fernandez FR, Noueihed J, White JA. 2019. Voltage-Dependent Membrane Properties Shape the Size But Not the Frequency Content of Spontaneous Voltage Fluctuations in Layer 2/3 Somatosensory Cortex. J Neurosci. 39(12):2221–2237.

Umpierre AD, West PJ, White JA, Wilcox KS. 2019. Conditional Knock-out of mGluR5 from Astrocytes during Epilepsy Development Impairs High-Frequency Glutamate Uptake. J Neurosci. 39(4):727–742.

Ji-Xin Cheng

Ji Yi

Liu R, Song W, Backman V, Yi J. 2019. Quantitative quality-control metrics for in vivo oximetry in small vessels by visible light optical coherence tomography angiography. Biomed Opt Express. 10(2):465–486.

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Neurophotonics Center Publications in 2019 (up to May)

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