{"id":5030,"date":"2026-09-03T13:28:00","date_gmt":"2026-09-03T17:28:00","guid":{"rendered":"https:\/\/www.bu.edu\/mcbb\/?page_id=5030"},"modified":"2026-09-03T13:28:12","modified_gmt":"2026-09-03T17:28:12","slug":"student-publications","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/mcbb\/programs\/student-publications\/","title":{"rendered":"Recent Student Publications"},"content":{"rendered":"

2025<\/h3>
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Bandyadka S., Lebo D.P.V., <\/span>Mondragon A.A.<\/b>, <\/span>Serizier S.B.<\/b>, Kwan J., Peterson J.S., <\/span>Chasse A.Y.<\/b>, Jenkins V.K., Calikyan A., Ortega A.J., Campbell J.D., Emili A., McCall K., 2025, Multi-modal comparison of molecular programs driving nurse cell death and clearance in <\/span>Drosophila melanogaster <\/span><\/i>oogenesis, PLoS Genet, 21:e1011220.\u00a0<\/span><\/p>\n

Bragdon M.D.J.<\/b>, Patel N., Chuang J., Levien E., Bashor C.J., Khalil A.S., 2023, Cooperative assembly confers regulatory specificity and long-term genetic circuit stability, Cell, 186:3810-3825.e18.\u00a0<\/span><\/p>\n

Descoteaux A.E.<\/b>, Radulovic M., Alburi D., Bradham C.A., 2025, CMTM4 is an adhesion modulator that regulates skeletal patterning and primary mesenchyme cell migration in sea urchin embryos, Dev Biol, 521:85-95.<\/span><\/p>\n

Dixon C.T.<\/b>, Yang P., McCall K., 2025, Traumatic injury leads to ovarian cell death and reproductive disturbances in Drosophila melanogaster, Biol Open. 14:BIO061825.<\/span><\/p>\n

Hwang, S. W., <\/span>Li, Y<\/b>., Green, A. A., & Liu, A. P. (2025). pH-responsive synthetic cells for controlled protein synthesis and release. <\/span>bioRxiv,<\/span><\/i>11.16.688650.<\/span><\/p>\n

Lambourne L., Mattioli K., Santoso C.<\/strong>, Sheynkman G., Inukai S., Kaundal B., <\/span>Berenson A<\/b>., Spirohn-Fitzgerald K., Bhattacharjee A., Rothman E., Shrestha S., Laval F., Carroll B.S., Plassmeyer S.P., Emenecker R.J., Yang Z., Bisht D., Sewell J.A., Li G., Prasad A., Phanor S., Lane R., Moyer D.C., Hunt T., Balcha D., Gebbia M., Twizere J.C., Hao T., Holehouse A.S., Frankish A., Riback J.A., Salomonis N., Calderwood M.A., Hill D.E., Sahni N., Vidal M., Bulyk M.L., Fuxman Bass J.I., 2025, Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms, Mol Cell, 85:1445-1466.<\/span><\/p>\n

Lion A.T.<\/b>, Bodine S.M., McCutcheon K.R., Ghogale M., Chandragiri S., Abayawardena D., Shrestha B.D., <\/span>Descoteaux A.<\/b>, Alvarez K., Balkman J.A., Cocke B., Wikramanayake A.H., Schlezinger J., Wong J.Y., Prakash V.N., Bradham C.A., 2025, PFAS compounds PFOA and Gen X are teratogenic to sea urchin embryos, Dev Biol, 525:139-154.<\/span><\/p>\n

Yan, Z., <\/span>Li, Y.<\/b>, Eshed, A., Wu, K., Ticktin, Z. M., Murugan, V., Lim, E. S., Hong, F., & Green, A. A. (2025). Programmable fluorescent aptamer-based RNA switches for rapid identification of point mutations. <\/span>Nature Chemistry<\/span><\/i>, 17(12), 1826\u20131838.<\/span><\/p>\n

Zhang, Y., Liu, Y., <\/span>Li, Y.<\/b>, Liu, T., & Wang, X. (2025). Maxillary palp gustatory receptors mediate aphid corpses avoidance in <\/span>Harmonia axyridis<\/span><\/i>. <\/span>Journal of Insect Physiology<\/span><\/i>, 104886.<\/span><\/p>\n

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2024<\/h3>
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Chasse A.Y.,<\/b> Bandyadka S., Wertheimer M.C., Serizier S.B., McCall K., 2024,. Professional phagocytes are recruited for the clearance of obsolete nonprofessional phagocytes in the <\/span>Drosophila<\/span><\/i> ovary, Front Immunol.. 15:1389674.<\/span><\/p>\n

Ezequiel Calvo-Roitberg\u2020, Christine L. Carroll\u2020, Sergey V. Venev, <\/span>GyeungYun Kim<\/b>, Steven T. Mick, Job Dekker, Ana Fiszbein*, Athma A. Pai*. mRNA initiation and termination are spatially coordinated (2024) BioRxiv<\/span><\/p>\n

Fournier L.A.<\/b>, <\/span>Phadke R.A.<\/b>, Salgado M., <\/span>Brack A.<\/b>, Nocon J.C., Bolshakoval S., Grant J.R., Luna N.M.P., Sen K., Cruz-Mart\u00edn A., 2024, Overexpression of the Brain-derived neurotrophic factor and its potential therapeutic role in stroke comorbidities, schizophrenia risk gene\u00a0 C4 in PV cells drives sex-dependent behavioral deficits and\u00a0 circuit dysfunction, iScience, 27:1-33.<\/span><\/p>\n

Gasper W.C.<\/b>, Gardner S., Ross A., Oppelt S.A., Allen K.N., Tolan D.R., 2024, Michaelis-like complex of mouse ketohexokinase isoform C, Acta Crystallogr D Struct Biol, 80:377-385.<\/span><\/p>\n

Givati S.,<\/span> Forchielli E.<\/b>, Aharonovich D., Barak N., Weissberg O., Belkin N., Rahav E., Segr\u00e8 D., Sher D., 2024, Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria,\u00a0 Appl Environ Microbiol, 90:e0025624.\u00a0<\/span><\/p>\n

He X.A., <\/span>Berenson A.<\/b>, Bernard M., Weber C., Fuxman Bass J.I., Fisher S., 2024, Identification of conserved skeletal enhancers associated with craniosynostosis risk genes, Hum Mol Genet, 33:837-849.<\/span><\/p>\n

Herbst K., Wang T.,<\/span> Forchielli E.J.<\/b>, Thommes M., Paschalidis I.C., Segr\u00e8 D., 2024, Multi-attribute subset selection enables prediction of representative phenotypes across microbial populations, Commun Biol, 7:407.<\/span><\/p>\n

Huang, H<\/b>., Jafarbeglou, F., Dunlop, J. M. (2025). \u201cSingle-cell characterization of bacterial optogenetic Cre recombinases\u201d. iScience.<\/span><\/p>\n

Lu Y., <\/span>Berenson A.<\/b>, Lane R., Guelin I., Li Z., Chen Y., Shah S., Yin M., Soto-Ugaldi L.F., Fiszbein A., Fuxman Bass J.I., 2024, A large-scale cancer-specific protein-DNA interaction network, Life Sci Alliance, 7:e202402641.\u00a0<\/span><\/p>\n

O’Connor M.<\/b>, Qiao H., Odamah K., Cerdeira P.C., Man H.Y., 2024, Heterozygous <\/span>Nexmif<\/span><\/i> female mice demonstrate mosaic NEXMIF expression, autism-like behaviors, and abnormalities in dendritic arborization and synaptogenesis, Heliyon, 10:e24703.<\/span><\/p>\n

Phadke, R.A., <\/span>Brack A.,<\/b> Fournier, L.A., Kruzich E., Mingqi S., Picard I., Johnson C., Stroumbakis D., Salgado M., Yeung, C., Velasco, B.E., Liu, Y.Y., Cruz-Mart\u00edn, A. 2024, The schizophrenia\u00a0 risk gene C4 induces pathological synaptic loss by impairing\u00a0 AMPAR trafficking, Mol Psychiatry, 30:796-809.<\/span><\/p>\n

Phadke R.A., Wetzel A.M., Fournier L.A.,<\/span> Brack A.<\/b>, Mingqi Sha, Nicole M. Padr\u00f3 Luna, Williamson R., Demas J., Cruz-Mart\u00edn A., 2024, REVEALS: an open source multi camera GUI for rodent\u00a0 behavior acquisition, Cereb Cortex, 34:1-8.<\/span><\/p>\n

Pinheiro A.<\/b>, Petty C.A., Stephens C.E., Cabrera K., Palanques-Tost E., Gower A.C., Marano M., Leviss E.M., Boberg M.J., Mahendran J., Bock P.M., Fetterman J.L., Naya F.J., 2024, The Dlk1-Dio3 noncoding RNA cluster coordinately regulates mitochondrial respiration and chromatin structure to establish proper cell state for muscle differentiation, Development, 151:1-17.<\/span><\/p>\n

Yan, Z., Eshed, A., Tang, A. A., Arevalos, N. R., Ticktin, Z. M., Chaudhary, S., Ma. D., McCutcheon, G., <\/span>Li, Y<\/b> … & Green, A. A. (2024). Rapid, multiplexed, and enzyme-free nucleic acid detection using programmable aptamer-based RNA switches. <\/span>Chem<\/span><\/i>.<\/span><\/p>\n

Zhou, Y., Sheng, P., Li, J., <\/span>Li, Y.<\/b>, Xie, M., & Green, A. A. (2024). Conditional RNA interference in mammalian cells via RNA transactivation. <\/span>Nature Communications<\/span><\/i>, <\/span>15<\/span><\/i>(1), 6855.<\/span><\/p>\n

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2023<\/h3>
<\/p>\n

Berenson A., <\/b>Lane R., Soto-Ugaldi L.F., Patel M., Ciausu C., Li Z., Chen Y., Shah S., Santoso C., Liu X., Spirohn K., Hao T., Hill D.E., Vidal M., Fuxman Bass J.I., 2023, Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors, Nat Commun, 14:6570.<\/span><\/p>\n

Berenson A.<\/b>, Fuxman Bass J.I., 2023, Enhanced yeast one-hybrid assays to study protein-DNA interactions, Methods Mol Biol, 2599:11-20.<\/span><\/p>\n

Descoteaux A.E.<\/b>, <\/span>Zuch D.T.<\/b>, Bradham C.A., 2023, Polychrome labeling reveals skeletal triradiate and elongation dynamics and abnormalities in patterning cue-perturbed embryos, Dev Biol, 498:1-13.<\/span><\/p>\n

Dixon C.T.<\/b>, McCall K., 2023, Characterization of female reproductive disturbances post-traumatic injury in <\/span>Drosophila melanogaster<\/span><\/i>, MicroPubl Biol., 2023:10.1792.\u00a0<\/span><\/p>\n

Hawkins D.Y., <\/span>Zuch D.T.<\/b>, Huth J., Rodriguez-Sastre N., McCutcheon K.R., Glick A., <\/span>Lion A.T.<\/b>, Thomas C.F., <\/span>Descoteaux A.E.<\/b>, Johnson W.E., Bradham, C.A, 2023, ICAT: A novel algorithm to robustly identify cell states following perturbations in single cell transcriptomes, Bioinformatics, 39:1-9.<\/span><\/p>\n

Hicks K.G., Cluntun A.A., Schubert H.L., Hackett S.R., Berg J.A., Leonard P.G., Ajalla Aleixo M.A., Zhou Y., Bott A.J., Salvatore S.R., Chang F., Blevins A., Barta P., Tilley S., Leifer A., Guzman A., Arok A., Fogarty S., Winter J.M., Ahn H.C., Allen K.N., Block S., Cardoso I.A., Ding J., Dreveny I., <\/span>Gasper W.C.<\/b>, Ho Q., Matsuura A., Palladino M.J., Prajapati S., Sun P., Tittmann K., Tolan D.R., Unterlass J., VanDemark A.P., Vander Heiden M.G., Webb B.A., Yun C.H., Zhao P., Wang B., Schopfer F.J., Hill C.P., Nonato M.C., Muller F.L., Cox J.E., Rutter J., 2023, Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase, Science, 379:996-1003.<\/span>\u00a0<\/span><\/p>\n

Kruzich E., Phadke R.A.,<\/span> Brack A.<\/b>, Stroumbakis D., Infante O., Cruz-Mart\u00edn A., 2023, A\u00a0 Pipeline for STED Super-Resolution Imaging and IMARIS\u00a0 Analysis of Nanoscale Synapse Organization in Cortical Brain\u00a0 Slices, STAR Protoc, 4:1-27.<\/span><\/p>\n

Mount R.A., Athif M., <\/span>O’Connor M.<\/b>, Saligrama A., Tseng H.A., Sridhar S., Zhou C., Bortz E., San Antonio E., Kramer M.A., Man H.Y., Han X., 2023, The autism spectrum disorder risk gene <\/span>NEXMIF<\/span><\/i> over-synchronizes hippocampal CA1 network and alters neuronal coding, Front Neurosci, 17:1277501.<\/span><\/p>\n

Patalano SD<\/b>, Fuxman Bass P, Fuxman Bass JI. Transcription factors in the development and treatment of immune disorders. Transcription. 2023.<\/span><\/p>\n

Rodr\u00edguez-Sastre N., Shapiro N., Hawkins D.Y., <\/span>Lion A.T.<\/b>, Peyreau M., Correa A.E., Dionne K., Bradham, C.A., 2023, Ethanol exposure perturbs sea urchin development and disrupts developmental timing, Dev Biol, 493:89-102.<\/span><\/p>\n

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2022<\/h3>
<\/p>\n

Ana Fiszbein, Michael McGurk, Ezequiel Calvo-Roitberg, <\/span>GyeungYun Kim<\/b>, Christopher B. Burge, Athma A. Pai Widespread occurrence of hybrid internal-terminal exons in human transcriptomes. (2022) Science Advance. 8, eabk1752<\/span><\/p>\n

Forchielli E.<\/b>, Sher D., Segr\u00e8 D., 2022, Metabolic phenotyping of marine heterotrophs on refactored media reveals diverse metabolic adaptations and lifestyle strategies, mSystems, 7:e0007022.<\/span><\/p>\n

Johnson C., Kretsge L.N., Yen W.W., Sriram B. , Alexandra O\u2019Connor, Liu R.S., Jimenez J.C., Phadke R.A., Wingfield K.K., Yeung C., Jinadasa T.J., Nguyen T.P.H., Cho E.S., Fuchs E., Spevack E.D., Velasco B.E., Hausmann F.S., Fournier L.A., <\/span>Brack A.<\/b>, Melzer S., Cruz-Mart\u00edn, A., 2022, Highly unstable heterogeneous\u00a0 representations in VIP interneurons of the anterior cingulate\u00a0 cortex, Mol Psychiatry, 27:2602-2618.<\/span><\/p>\n

Kaplan K.M.<\/b>, Morgan K.G, 2022, The importance of dystrophin and the dystrophin associated proteins in vascular smooth muscle, Front Physiol., 13:1059021.<\/span>\u00a0\u00a0<\/span><\/p>\n

Landaverde L., McIntyre D., Robson J., Fu D., <\/span>Ortiz L.<\/b>, Chen R., Oliveira S.M.D., Fan A., Barrett A., Burgay S.P., Choate S., Corbett D., Doucette-Stamm L., Gonzales K., Hamer D.H., Huang L., Huval S., Knight C., Landa C., Lindquist D., Lockard K., Macdowell T.L., Mauro E., McGinty C., Miller C., Monahan M., Moore R., Platt J., Rolles L., Roy J., Schroeder T., Tolan D.R., Zaia A., Brown R.A., Waters G., Densmore D., Klapperich C.M., 2022, Buildout and integration of an automated high-throughput CLIA laboratory for SARS-CoV-2 testing on a large urban campus, SLAS Technol, 27:302-311.<\/span><\/p>\n

Serizier S.B.<\/b>, Peterson J.S., McCall K., 2022, Non-autonomous cell death induced by the Draper phagocytosis receptor requires signaling through the JNK and SRC pathways, J Cell Sci, 135: jcs250134.<\/span><\/p>\n

Soto L., Li Z., Santoso C.S., <\/span>Berenson A.<\/b>, Ho I., Shen V.X., Yuan S., Fuxman Bass J.I., 2022, Compendium of human transcription factor effector domains, Mol Cell, 82:514-526.<\/span><\/p>\n

Wamhoff, E. C., Romanov, A., <\/span>Huang, H<\/b>., Read, B. J., Ginsburg, E., Knappe, G. A., Kim, H. M., Farrell, N. P., Irvine, D. J., Bathe, M. (2022). \u201cControlling nuclease degradation of wireframe DNA origami with minor groove binding\u201d. ACS Nano.<\/span><\/p>\n

Yunes S.A.<\/b>, Willoughby J.L.S., Kwan J.H., Biagi J.M., Pokharel N., Chin H.G., York E.A., Su K.C., George K., Shah J.V., Emili A., Schaus S.E., Hansen U., 2022, Factor quinolinone inhibitors disrupt spindles and multiple LSF (TFCP2)-protein interactions in mitosis, including with microtubule-associated proteins, PLoS One, 17: e0268857.<\/span><\/p>\n

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2021<\/h3>
<\/p>\n

Banal, J., Shepherd, T. R., Berleant, J. D., <\/span>Huang, H<\/b>., Reyes, M., Ackerman, C., Blainey, P. C., Bathe, M. (2021). \u201cRandom access DNA memory using Boolean search in an archival file storage system\u201d. Nature Materials.<\/span><\/p>\n

Dill T.L., Carroll A., <\/span>Pinheiro A.<\/b>, Gao J., Naya F.J., 2021, The long noncoding RNA <\/span>Meg3<\/span><\/i> regulates myoblast plasticity and muscle regeneration through epithelial-mesenchymal transition, Development., 148:1-19.<\/span>\u00a0<\/span><\/p>\n

GyeungYun Kim<\/b>*, Youngki Lee*, Junkyu Ha, Sangrok Han, Minhyung Lee (2021) Engineering exosomes for pulmonary delivery of peptides and drugs to inflammatory lung cells by inhalation. J. Control. Release. 330;684-695<\/span><\/p>\n

Kuniholm J, Armstrong E, Bernabe B, Coote C, <\/span>Berenson A<\/b>, <\/span>Patalano SD<\/b>, Olson A, He X, Lin N, Fuxman Bass JI, Henderson AJ. Intragenic proviral elements support transcription of defective HIV-1 proviruses. PLoS Pathogens. 2021.<\/span><\/p>\n

Lashkaripour A., Rodriguez C., Mehdipour N., Mardian R., McIntyre D., <\/span>Ortiz L.<\/b>, Campbell J., Densmore D., 2021, Machine learning enables design automation of microfluidic flow-focusing droplet generation, Nat Commun, 12:25.<\/span><\/p>\n

Lebo D.P.V., Chirn A., Taylor J.D., Levan A., Doerre Torres V., Agreda E., <\/span>Serizier S.B.<\/b>, Lord A.K., Jenkins V.K., McCall K., 2021, An RNAi screen of the kinome in epithelial follicle cells of the <\/span>Drosophila melanogaster<\/span><\/i> ovary reveals genes required for proper germline death and clearance, G3 (Bethesda), 11: jkaa066.<\/span><\/p>\n

Youngki Lee, Jeil Lee, Minkyung Kim, <\/span>GyeungYun Kim<\/b>, JoonSig Choi, Minhyung Lee (2021) Brain gene delivery using histidine and arginine-modified dendrimers for ischemic stroke therapy. J. Control. Release. 330;907-919.<\/span><\/p>\n

Mota A.<\/b>, Waxman H.K., Hong R., Lagani G.D., Niu S.Y., Bertherat F.L., Wolfe L., Malicdan C.M., Markello T.C., Adams D.R., Gahl W.A., Cheng C.S., Beffert U., Ho A., 2021, FOXR1 regulates stress response pathways and is necessary for proper brain development, PLoS Genet, 17:e1009854.<\/span>\u00a0<\/span><\/p>\n

Ortet P.C.<\/b>, Muellers S.N., Viarengo-Baker L.A., Streu K., Szymczyna B.R., Beeler A.B., Allen K.N., Whitty A., 2021, Recapitulating the binding affinity of Nrf2 for KEAP1 in a cyclic heptapeptide, guided by NMR, X-ray crystallography, and machine learning, J Am Chem Soc, 143:3779-3793.<\/span><\/p>\n

Pinheiro A.<\/b>, Naya F.J., 2021, The Key Lnc (RNA)s in Cardiac and Skeletal Muscle Development, Regeneration, and Disease, J Cardiovasc Dev Dis, 8:1-19.<\/span><\/p>\n

Rasekh ME, Hernandez Y, <\/span>Drinan SD<\/b>, Fuxman Bass JI, Benson G. Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences. Nucleic Acids Res. 2021.<\/span><\/p>\n

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2020<\/h3>
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Gilbert J., <\/span>O’Connor M.<\/b>, Templet S., Moghaddam M., Di Via Ioschpe A., Sinclair A., Zhu L.Q., Xu W., Man H.Y., 2020, NEXMIF\/KIDLIA knock-out mouse demonstrates autism-like behaviors, memory deficits, and impairments in synapse formation and function, J Neurosci, 40, 237-254.\u00a0<\/span><\/p>\n

Hogan J.D., Keenan J.L., Luo L., Ibn-Salem J., Lamba A., Schatzberg D., Piacentino M.L., <\/span>Zuch D.T.<\/b>, Core A.B., Blumberg C., Timmermann B., Grau J.H., Speranza E., Andrade-Navarro M.A., Irie N., Poustka A.J., Bradham C.A., 2020, The developmental transcriptome for <\/span>Lytechinus variegatus<\/span><\/i> exhibits temporally punctuated gene expression changes, Dev Biol, 460:139-154.<\/span><\/p>\n

Karagiannis T.T., <\/span>Cleary J.P.<\/b>, Gok B., 2020, Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program, Nat Commun, 11:2611.<\/span>\u00a0<\/span><\/p>\n

GyeungYun Kim*<\/b>, Minkyung Kim*, Youngki Lee, Jung Woo Byun, Do Won Hwang, and Minhyung Lee (2020) Systemic delivery of microRNA-21 antisense oligonucleotides to the brain using T7-peptide decorated exosomes. J. Control. Release. 2020 Jan 10;317:273-281<\/span><\/p>\n

Liu W., Wang X.,<\/span> O’Connor M., <\/b>Wang G., Han F., 2020, Brain-derived neurotrophic factor and its potential therapeutic role in stroke comorbidities, Neural Plast, 2020:1-13.<\/span><\/p>\n

O’Connor M.<\/b>, Shentu Y.P., Wang G., Hu W.T., Xu Z.D., Wang X.C., Liu R., Man H.Y., 2020, Acetylation of AMPA receptors regulates receptor trafficking and rescues memory deficits in Alzheimer’s Disease, iScience, 23: 101465.<\/span><\/p>\n

Stoiber P.<\/b>, Ekladious I., Zhao Q., Colson Y.L., Schaus S.E., Hansen U., Grinstaff M.W., 2020, Expansile nanoparticles encapsulate factor quinolinone inhibitor 1 and accumulate in murine liver upon intravenous administration, Biomacromolecules, 21:1499-1506.<\/span>\u00a0<\/span><\/p>\n

Tang W., Xin X., <\/span>O’Connor M.,<\/b> Zhang N., Lai B., Man H.Y., Xie Y., Wei Y., 2020, Transient sublethal hypoxia in neonatal rats causes reduced dendritic spines, aberrant synaptic plasticity, and impairments in memory. J Neurosci Res, 98, 1588-1604.<\/span><\/p>\n

Williams L.M., Inge M.M., Mansfield K.M., Rasmussen A., Afghani J., Agrba M., Albert C., Andersson C., Babaei M., Bagdasaryants A., Bonilla A., Browne A., Carpenter S., Chen T., Christie B., Cyr A., Dam K., Dulock N., Erdene G., Esau L., Esonwune S., Hanchate A., Huang X., Jennings T., Kasabwala A., Kehoe L., Kobayashi R., Lee M., LeVan A., Liu Y., Murphy E., Nambiar A., Olive M., Patel D., Pavesi F., Petty C.A., Samofalova Y., Sanchez S., Stejskal C., Tang Y., Yapo A., Cleary J.P. Jr., <\/span>Yunes S.A.<\/b>, Siggers T., Gilmore T.D., 2020, Transcription factor NF-\u03baB in a basal metazoan, the sponge, has conserved and unique sequences, activities, and regulation, Dev Comp Immunol, 104:103559.\u00a0<\/span><\/p>\n

Willoughby J.L.S., George K., Roberto M.P., Chin H.G., <\/span>Stoiber P.<\/b>, Shin H., Pedamallu C.S., Schaus S.E., Fitzgerald K., Shah J., Hansen U., 2020, Targeting the oncogene LSF with either the small molecule inhibitor FQI1 or siRNA causes mitotic delays with unaligned chromosomes, resulting in cell death or senescence, BMC Cancer, 20:552.<\/span><\/p>\n

Yalonetskaya A.,<\/span> Mondragon A.A.<\/b>, Hintze Z.J., Holmes S., McCall K., 2020, Nuclear degradation dynamics in a nonapoptotic programmed cell death. Cell Death Differ, 27:711-724.<\/span><\/p>\n

Zhang, Y., Wang, X., Feng, Z., Cong, H., Chen, Z., <\/span>Li, Y.<\/b>, … & Liu, T.(2020). Superficially similar adaptation within one species exhibits similar morphological specialization but different physiological regulations and origins. <\/span>Frontiers in Cell and Developmental Biology, 8<\/span><\/i>, 300.<\/span><\/p>\n

Zhong, M., Lynch, A., Muellers, S.N., Jehle, S., Luo, L., Hall, D.R., Iwase, R., Carolan, J.P., Egbert, M., Wakefield, A., Streu, K., Harvey, Cv.M., <\/span>Ortet, P.C.<\/b>, Kozakov, D., Vajda, S., Allen, K.N., and Whitty, A., 2020, Interaction energetics and druggability of the protein\u2013protein interaction between Kelch-like ECH-associated protein 1 (KEAP1) and nuclear factor erythroid 2 like 2 (Nrf2), Biochemistry, 59:563\u2013581. <\/span><\/p>\n

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2019<\/h3>
<\/p>\n

Camblin A.J. <\/b>, Gege T., Curley M.D., Yannatos I., Iadevaia S., Rimkunas V., Mino-Kenudson M., Bloom T., Schoeberl B., Drummond D.C., Lugovskoy A.A., Louis C.U., Askoxylakis, V., 2019, Dual targeting of IGF-1R and ErbB3 as a potential therapeutic regimen for ovarian cancer, Sci Rep, 9:16382.<\/span>\u00a0<\/span><\/p>\n

Eric M. Tam E.M., Fulton R.B., Sampson J.F., Muda M., <\/span>Camblin A.J.<\/b>, Richards J., Koshkaryev A., Tang J., Kurella V., Jiao Y., Xu L., Zhang K., Kohli N., Luus L., Hutto, E., Kumar S., Lulo J., Paragas V., Wong C., Suchy J., Grabow S., Dugast A., Zhang H., Depis F., Feau S., Jakubowski A., Qiao W., Craig G., Razlog M., Qiu J., Zhou Y., Marks J.D., Croft M., Drummond D.C., Raue A., 2019, Antibody-mediated targeting of TNFR2 activates CD8+ T cells in mice and promotes antitumor immunity, Sci Trans Med, 11:eaax0720.<\/span><\/p>\n

Feng, Y., <\/span>Li, Y.<\/b>, Liu, Z., Yu, X., Zhu, G., Keller, M., & Liu, T. (2019). Behavioural patterns and functional responses of a generalist predator revealed using automated video tracking. <\/span>Pest management science<\/span><\/i>, <\/span>75<\/span><\/i>(6), 1517-1526.<\/span><\/p>\n

Gyeungyun Kim<\/b>, Chunxian Piao, Jungju Oh, Minhyung Lee (2019) Combined delivery of curcumin and the heme oxygenate-1 gene using cholesterol-conjugated polyamidoamine for anti-inflammatory therapy in acute lung injury. Phytomed. 56:165-174.<\/span><\/p>\n

Minkyung Kim*, <\/span>GyeungYun Kim*<\/b>, Do Won Hwang, and Minhyung Lee (2019) Delivery of high mobility group box-1 siRNA using brain-targeting exosomes for ischemic stroke therapy. J. Biomed. Nanotechnol. 2019 Dec 1;15(12):2401-2412<\/span><\/p>\n

Lashkaripour A., Rodriguez C., <\/span>Ortiz L.<\/b>, Densmore D, 2019, Performance tuning of microfluidic flow-focusing droplet generators, Lab Chip, 19:1041-1053.<\/span><\/p>\n

Mondragon A.A.<\/b>, Yalonetskaya A., Ortega A.J., Zhang Y., Naranjo O., Elguero J., Chung W.S., McCall K., 2019, Lysosomal machinery drives extracellular acidification to direct non-apoptotic cell death, Cell Rep, 27:11-19.<\/span><\/p>\n

Chunxian Piao, <\/span>GyeungYun Kim<\/b>, Junkyu Ha, and Minhyung Lee (2019) Inhalable gene delivery system using a cationic RAGE-antagonist peptide for gene delivery to inflammatory lung cells. ACS Biomat. Sci. Eng. 5:2247-2257.<\/span><\/p>\n

Rossi N.A.<\/b>, El Meouche I., Dunlop M.J., 2019, Forecasting cell fate during antibiotic exposure using stochastic gene expression. Commun Biol. 2: 259.\u00a0<\/span><\/p>\n

Walsh D.I. 3rd, Pavan M., <\/span>Ortiz L.<\/b>, Wick S., Bobrow J., Guido N.J., Leinicke S., Fu D., Pandit S., Qin L., Carr P.A., Densmore D., 2019, Standardizing automated DNA assembly: best practices, metrics, and protocols using robots, SLAS Technol, 24:282-290.<\/span><\/p>\n

Zuch D.T.<\/b> and Bradham C.A., 2019, Spatially mapping gene expression in sea urchin primary mesenchyme cells, Methods Cell Biol, 151:433-442.<\/span><\/p>\n

<\/div>\n<\/div>\n\n

2018<\/h3>
<\/p>\n

Camblin A.J.<\/b>, Pace E., Adams S.A., Curley M., Rimkunas V., Nie L, Tan G., Bloom T., Ladevaia S., Baum J.B., Minx C., Czibere A., Louis C.U., Drummond D., Nielsen U., Schoeberl B., Pipas M., Straubinger R., Askoxylakis V., Lugovskoy A.A., 2018, Dual inhibition of IGF-1R and ErbB3 enhances the activity of gemcitabine and nab-paclitaxel in preclinical models of pancreatic cancer, Clin Cancer Res, 24:2873-2885.\u00a0<\/span><\/p>\n

Feng, Y., Zhou, Z., An, M., <\/span>Li, Y.<\/b>, Liu, Z., Wang, L., … & Liu, T. (2018). Conspecific and heterospecific interactions modify the functional response of Harmonia axyridis and Propylea japonica to Aphis citricola. <\/span>Entomologia Experimentalis et Applicata<\/span><\/i>, <\/span>166<\/span><\/i>(11-12), 873-882.<\/span><\/p>\n

Gyeungyun Kim<\/b>, Chunxian Piao, Jungju Oh, and Minhyung Lee (2018) Self-assembled polymeric micelles for combined delivery of anti-inflammatory gene and drug to the lungs by inhalation. Nanoscale. 18: 8503-8514.<\/span><\/p>\n

Eunji Choi, Jungju Oh, Dahee Lee, Jaewon Lee, Xiaonan Tan, Minkyung Kim, <\/span>Gyeungyun Kim<\/b>, Chunxian Piao, and Minhyung Lee, A ternary-complex of a suicide gene, a RAGE-binding peptide, and polyethylenimine as a gene delivery system with anti-tumor and anti-angiogenic dual effects in glioblastoma. J. Con. Release (2018) 279: 40-52.<\/span><\/p>\n

Rossi N.A.<\/b>, Mora T., Walczak A.M., Dunlop M.J., 2018, Active degradation of MarA controls coordination of its downstream targets. PLoS Comput Biol, 14: e1006634.<\/span><\/p>\n

Rossi N.A.<\/b>, Dunlop M.J., 2018, Making waves with synthetic oscillators. Cell Syst, 6: 406-407.<\/span><\/p>\n

Seonyeong Lee, Chunxian Piao, <\/span>Gyeungyun Kim<\/b>, Ji Yeon Kim, Eunji Choi, and Minhyung Lee (2018) Production and application of HMGB1 derived recombinant RAGE-antagonist peptide for anti-inflammatory therapy in acute lung injury. Eur. J. Pharm. Sci. 114: 275-284.<\/span><\/p>\n

Xiaonan Tan, <\/span>Gyeungyun Kim<\/b>, Dahee Lee, Jungju Oh, Minkyung Kim, Chunxian Piao, Jaewon Lee, Min Sang Lee, Ji Hoon Jeong, and Minhyung Lee (2018) A curcumin-loaded polymeric micelle as a carrier of a microRNA-21 antisense-oligonucleotide for enhanced anti-tumor effects in a glioblastoma animal model. Biomater. Sci. 6: 407-417.<\/span><\/p>\n

Williams L.M., Fuess L.E., Brennan J.J., Mansfield K.M., Salas-Rodriguez E., Welsh J., Awtry J., Banic S., Chacko C., Chezian A., Dowers D., Estrada F., Hsieh Y-H., Kang J., Li W., Malchiodi Z., Malinowski J., Matuszak S., McTigue IV. T., Mueller D., Nguyen B., Nguyen M., Nguyen P., Nguyen S., Njoku N., Patel K., Pellegrini W., Pliakas T., Qadir D., Ryan E., Schiffer A., Thiel A., <\/span>Yunes S.A.<\/b>, Spilios K.E., Pinz\u00f3n C.J.H., Mydlarz L.D., Gilmore T.D., 2018, A conserved Toll-like receptor-to-NF-\u03baB signaling pathway in the endangered coral <\/span>Orbicella faveolata<\/span><\/i>,<\/span> Dev Comp Immunol, 79:128-136.<\/span><\/p>\n

Yalonetskaya A., <\/span>Mondragon A.A.<\/b>, Elguero J., McCall K., 2018, I spy in the developing fly a multitude of ways to die. J Dev Biol, 6:26.<\/span><\/p>\n

<\/div>\n<\/div>\n\n

2017<\/h3>
<\/p>\n

Ji Yeon Kim, Chunxian Piao, <\/span>Gyeungyun Kim<\/b>, Seonyeong Kim, Min Sang Lee, Ji Hoon Jeong, and Minhyung Lee (2017) Combined delivery of a lipopolysaccharide-binding peptide and the heme oxygenase-1 gene using deoxycholic acid-conjugated polyethylenimine for the treatment of acute lung injury. Macromol. Biosci. 17(8)<\/span><\/p>\n

Ortiz L.<\/b>, Pavan M., McCarthy L., Timmons J., Densmore D.M., 2017, Automated robotic liquid handling assembly of modular DNA devices, J Vis Exp, 130:54703.<\/span><\/p>\n

Rossi N.A.<\/b>, Dunlop M.J., 2017, Customized regulation of diverse stress response genes by the multiple antibiotic resistance activator MarA. PLoS Comput Biol, 13:e1005310.<\/span><\/p>\n

Serizier S.B.<\/b>, McCall K., 2017, Scrambled eggs: apoptotic cell clearance by non-professional phagocytes in the <\/span>Drosophila<\/span><\/i> ovary, Front Immunol, 8 :1642.<\/span><\/p>\n

Simhadri R.K., Fast E.M., Guo R., Schultz M.J., Vaisman N., <\/span>Ortiz L.<\/b>, Bybee J., Slatko B.E., Frydman H.M.,, 2017, The gut commensal microbiome of <\/span>Drosophila melanogaster<\/span><\/i> is modified by the endosymbiont Wolbachia, mSphere, 2:e00287-17.\u00a0<\/span><\/p>\n

Timmons A.K., <\/span>Mondragon A.A.<\/b>, Meehan T.L., McCall K., 2017, Control of non-apoptotic nurse cell death by engulfment genes in <\/span>Drosophila<\/span><\/i>. Fly (Austin), 11:104-111.<\/span><\/p>\n

<\/div>\n<\/div>\n\n

2016<\/h3>
<\/p>\n

Binna Oh, Hojung Song, Dahee Lee, Jungju Oh, <\/span>Gyeungyun Kim<\/b>, Sung-Hee Ihm, and Minhyung Lee (2016) Anti-cancer effect of R3V6 peptide-mediated delivery of an anti-microRNA-21 antisense-oligodeoxynucleotide in a glioblastoma animal model. J. Drug Target. 25(2): 132-139<\/span><\/p>\n

Meehan T.L., <\/span>Serizier S.B.<\/b>, Kleinsorge S.E., McCall K., 2016, Analysis of phagocytosis in the <\/span>Drosophila<\/span><\/i> ovary, Methods Mol Biol, 1457:79-95.<\/span><\/p>\n

Piacentino M.L., Chung O., Ramachandran J., <\/span>Zuch D.T.<\/b>, Yu J., Conaway E.A., Reyna A.E., Bradham C.A., 2016, Zygotic LvBMP5-8 is required for skeletal patterning and for left-right but not dorsal-ventral specification in the sea urchin embryo, Dev Biol, 412:44-56.<\/span>
\n<\/span><\/p>\n

Piacentino M.L., <\/span>Zuch D.T.<\/b>, Fishman J., Rose S., Speranza E.E., Li C., Yu J., Chung O., Ramachandran J., Ferrell P., Patel V., Reyna A., Hameeduddin H., Chaves J., Hewitt F.B., Bardot E., Lee D., Core A.B., Hogan J.D., Keenan J.L., Luo L., Coulombe-Huntington J., Blute T.A., Oleinik E., Ibn-Salem J., Poustka A.J., Bradham C.A., 2016, RNA-Seq identifies SPGs a ventral skeletal patterning cue in sea urchins, Development, 143: 703-714.<\/span>\u00a0<\/span><\/p>\n

Timmons A.K., <\/span>Mondragon A.A.<\/b>, Schenkel C.E., Yalonetskaya A., Taylor J.D., Moynihan K.E., Etchegaray J.I., Meehan T.L., McCall K., 2016, Phagocytosis genes nonautonomously promote developmental cell death in the <\/span>Drosophila<\/span><\/i> ovary. Proc Natl Acad Sci USA., 113:E1246-1255.<\/span><\/p>\n

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