{"id":860,"date":"2015-12-21T09:18:26","date_gmt":"2015-12-21T14:18:26","guid":{"rendered":"https:\/\/www.bu.edu\/hanlab\/?page_id=860"},"modified":"2019-06-14T15:01:19","modified_gmt":"2019-06-14T19:01:19","slug":"resources","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/hanlab\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"

PLASMIDS<\/strong><\/span><\/p>\n

Plasmids can be requested through Addgene–Xue Han Lab
\n<\/a><\/strong><\/p>\n

Zhuo JM, Tseng HA, Desai M, Bucklin ME, Mohammed AI, Robinson NT, Boyden ES, Rangel LM, Jasanoff AP, Gritton HJ, Han X. Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks.<\/a> Elife. 2016 PubMed PMID: 27914197; PubMed Central PMCID: PMC5156524.
\nAvailable plasmids on Addgene:<\/strong> pMSCV-GFP,\u00a0pMSCV-ArchT-GFP<\/p>\n

Sayeg, Marianna; Weinberg, Benjamin; Cha, Susie; Goodloe, Michael; Wong, Wilson; Han, Xue. Rationally designed microRNA-based genetic classifiers target specific neurons in the brain<\/a>. ACS Syn Bio, 2015 PDF
\n<\/a>Available plasmids on Addgene:<\/strong> 12X1C mAGNET<\/a>,\u00a0 8X2C mAGNET<\/a>,\u00a0 4X3C mAGNET<\/a>,\u00a0 4X2C mAGNET<\/a>,\u00a0 pHR-pEF-EGFP<\/a><\/p>\n

<\/a><\/p>\n

 <\/p>\n

SOFTWARES<\/strong><\/span><\/p>\n

Software codes can be downloaded at Github HanlabBU. https:\/\/github.com\/HanLabBU<\/a><\/strong><\/p>\n

Simon P Shen, Hua-an Tseng, Kyle R Hansen, Ruofan Wu, Howard Gritton, Jennie Si, Xue Han, Automatic Cell Segmentation by Adaptive Thresholding (ACSAT) for large scale calcium imaging datasets<\/a>, eNeuro, 2018\u00a0 (Download Matlab Scripts on GitHub<\/a>)<\/p>\n

Hansen KR, DeWalt GJ, Mohammed AI, Tseng HA, Abdulkerim ME, Bensussen S, Saligrama V, Nazer B, Eldred WD, Han X. Mild Blast Injury Produces Acute Changes in Basal Intracellular Calcium Levels and Activity Patterns in Mouse Hippocampal Neurons<\/a>\u00a0J Neurotrauma, 2018
\nGithub Repo for Matlab Code:<\/strong> mTBI_Ca_Hippocampus
\n<\/a>Supplemental Videos: <\/strong>Video1<\/a>\u00a0\u00a0\u00a0 Video2<\/a><\/p>\n

Ali I. Mohammed, Howard J. Gritton, Hua-an Tseng, Mark E. Bucklin, Zhaojie Yao & Xue Han. An integrative approach for analyzing hundreds of neurons in task performing mice using wide-field calcium imaging\u00a0 <\/a>Scientific Reports, 2016 PDF
\n<\/a>Download the software:<\/strong>\u00a0pfgc
\n<\/a>Download software Manual:<\/strong>\u00a0WideField_SoftwareManual
\n<\/a>Download sample videos:<\/strong> Software Demo Image Files<\/a><\/p>\n

 <\/p>\n

DNA ORIGAMI caDNAno FILES<\/strong><\/span><\/p>\n

Richie E. Kohman, and Xue Han. “Light-Sensitization of DNA Nanostructures via Incorporation of Photo-Cleavable Spacers<\/a>.” Chem. Commun. 2015. PMID: 25720373 PDF<\/a>; Download: caDNAno file for the spheres<\/a><\/p>\n

Kohman RE, Cha SS, Man HY, Han X. Light-Triggered Release of Bioactive Molecules from DNA Nanostructures. <\/a>Nano Letters, 2016 PDF for academic use<\/a>; Download: caDNAno file for the barrel<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

PLASMIDS Plasmids can be requested through Addgene–Xue Han Lab Zhuo JM, Tseng HA, Desai M, Bucklin ME, Mohammed AI, Robinson NT, Boyden ES, Rangel LM, Jasanoff AP, Gritton HJ, Han X. Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks. Elife. 2016 PubMed PMID: 27914197; PubMed Central PMCID: PMC5156524. Available plasmids […]<\/p>\n","protected":false},"author":3417,"featured_media":0,"parent":0,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/pages\/860"}],"collection":[{"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/users\/3417"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/comments?post=860"}],"version-history":[{"count":44,"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/pages\/860\/revisions"}],"predecessor-version":[{"id":1162,"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/pages\/860\/revisions\/1162"}],"wp:attachment":[{"href":"https:\/\/www.bu.edu\/hanlab\/wp-json\/wp\/v2\/media?parent=860"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}