{"id":138,"date":"2019-10-11T14:21:05","date_gmt":"2019-10-11T18:21:05","guid":{"rendered":"https:\/\/www.bu.edu\/engit\/?page_id=138"},"modified":"2025-12-10T08:54:26","modified_gmt":"2025-12-10T13:54:26","slug":"software","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/engit\/knowledge-base\/grid\/software\/","title":{"rendered":"Software available in ENG Linux Labs and on the SCC"},"content":{"rendered":"
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Software Package<\/strong><\/td>\nDescription<\/strong><\/td>\nVersion<\/strong><\/td>\nMain Command<\/strong><\/td>\nLocation<\/strong><\/td>\nRestricted License?<\/strong><\/td>\n<\/tr>\n
Abaqus<\/a><\/td>\nFinite Element Analysis<\/td>\n6.8.4<\/td>\nabaqus<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
6.14<\/td>\nabaqus-6.14<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Altair Hyperworks<\/td>\nTopography<\/td>\n2.20<\/td>\nhwx<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Anaconda Python<\/a><\/td>\nPython Distribution<\/td>\n2.7<\/td>\npython-anaconda<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
3.4<\/td>\npython34-anaconda<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
BLAST+<\/td>\nBiological Sequence Analysis<\/td>\n2.2.29<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
ANSYS 13 HFSS<\/td>\nEM Simulation<\/td>\n13<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Arduino<\/td>\nIntegrated Development Environment<\/td>\n1.8.3<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
ARM DS-5<\/td>\nIntel Development Studio<\/td>\nDS-5_v5.29.3<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Cadence<\/td>\nElectronic Design Automation<\/td>\nMultiple<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
CompuCell3D<\/a><\/td>\nMultiscale Biological Simulations<\/td>\n3.7.3<\/td>\ncompucell3d<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
COMSOL<\/a><\/td>\nFinite Element Analysis<\/td>\n5.2<\/td>\ncomsol<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
5.1<\/td>\ncomsol51<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
5.0<\/td>\ncomsol50<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
4.4<\/td>\ncomsol44<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
4.3<\/td>\ncomsol43<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
CPLEX<\/td>\nLinear Optimization<\/td>\n12.6.0<\/td>\ncplex<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
12.5.1<\/td>\ncplex1251<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
FFmpeg<\/td>\nMultimedia Framework<\/td>\nN-79126<\/td>\nffmpeg<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Foldit<\/td>\nProtein Folding as a Puzzle Game<\/td>\n<\/td>\nfoldit<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
genometools<\/td>\nGenome Analysis<\/td>\n1.5.7<\/td>\ngt<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
gmsh<\/td>\nFinite Element Mesh Generator<\/td>\n2.14.0<\/td>\ngmsh<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
GNU Binutils<\/td>\nProgramming tools<\/td>\n2.26<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
GNU GCC<\/td>\nCompiler Suite (C, C++ packages)<\/td>\n5.2.1<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Gnuplot<\/td>\nGraphing tool<\/td>\n5.0.2<\/td>\ngnuplot<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Graphviz<\/td>\nGraph Visualization<\/td>\n2.26<\/td>\ndot<\/td>\nLocal<\/td>\n<\/td>\n<\/tr>\n
GROMACS<\/td>\nMolecular Dynamics Simulator<\/td>\n5.0.2<\/td>\ngmx<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Gurobi<\/a><\/td>\nOptimization Solver<\/td>\n6.5.1<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Intel Composer XE<\/a><\/td>\nC++ Compiler Suite<\/td>\n2011_sp1.8.273<\/td>\nicc<\/td>\nENG<\/td>\nEducational Use Only<\/td>\n<\/tr>\n
ImageJ<\/td>\nImage Processing<\/td>\n1.49<\/td>\nImageJ<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
LAMMPS<\/td>\nMolecular Dynamics Simulator<\/td>\n2012-11-14<\/td>\nlammps<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
libctl<\/td>\ncontrol files for simulations<\/td>\n3.2.2<\/td>\ngen-ctl-io<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Lumerical FDTD<\/a><\/td>\nFDTD-method Maxwell solver<\/td>\n8.11.387<\/td>\nlumerical-fdtd-8.11<\/td>\nENG<\/td>\nBy user<\/a><\/td>\n<\/tr>\n
8.15.758<\/td>\nlumerical-fdtd<\/td>\nENG<\/td>\n<\/tr>\n
Lumerical MODE<\/a><\/td>\nWaveguide Design Environment<\/td>\n7.5.387<\/td>\nlumerical-mode<\/td>\nENG<\/td>\n<\/tr>\n
Lumerical DEVICE<\/td>\nSemiconductor Multiphysics<\/td>\n5.0.847<\/td>\nlumerical-device<\/td>\nENG<\/td>\n<\/tr>\n
Mathematica<\/td>\nComputer Algebra System<\/td>\n9.0.1<\/td>\nmathematica901<\/td>\nAFS<\/td>\n<\/td>\n<\/tr>\n
10.0.1<\/td>\nmathematica<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
MATLAB<\/a><\/td>\nNumerical Computing<\/td>\n2013a (8.1)<\/td>\nmatlab81<\/td>\nAFS<\/td>\n<\/td>\n<\/tr>\n
2014a (8.3)<\/td>\nmatlab83<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2015a (8.5)<\/td>\nmatlab85<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2015b (8.6)<\/td>\nmatlab86<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2016a (9.0)<\/td>\nmatlab90<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2016b (9.1)<\/td>\nmatlab91<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2017a (9.2)<\/td>\nmatlab92<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2017b (9.3)<\/td>\nmatlab93<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
2018a (9.4)<\/td>\nmatlab94<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Meep<\/td>\nFDTD electromagnetic simulator<\/td>\n1.3<\/td>\nmeep<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Minicom<\/td>\nTerminal Emulator<\/td>\n2.3<\/td>\nminicom<\/td>\nLocal<\/td>\n<\/td>\n<\/tr>\n
Morpheus<\/td>\nMultiscale\/Multicellular Simulations<\/td>\n1.9.1<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
MPB<\/td>\nElectromagnetic simulator<\/td>\n1.5<\/td>\nmpb<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
OpenCV<\/a><\/td>\nComputer Vision Library<\/td>\n3.1.0<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
PyMOL<\/td>\nMolecular Visualization System<\/td>\n1.6<\/td>\npymol<\/td>\nLocal<\/td>\n<\/td>\n<\/tr>\n
Quantum ESPRESSO<\/td>\nAb Initio Quantum Simulator<\/td>\n4.3.1<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
R<\/td>\nStatistical Computing<\/td>\n3.0.1<\/td>\nR<\/td>\nLocal<\/td>\n<\/td>\n<\/tr>\n
Python<\/td>\nPython Development Environment<\/td>\n2.7.5<\/td>\npython<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
RStudio<\/td>\nR Development Environment<\/td>\n0.98.994<\/td>\nrstudio<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
SPIM & XSPIM<\/td>\nMIPS Simulator<\/td>\n7.3<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Siemens\/Mentor Modelsim<\/td>\nHDL Simulator<\/td>\n10.7c<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Synopsys<\/td>\nEDA Tools<\/td>\n<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n
Xilinx\/Vivado<\/td>\nHDL & ML<\/td>\n2021.2<\/td>\n<\/td>\nENG<\/td>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Software Package Description Version Main Command Location Restricted License? Abaqus Finite Element Analysis 6.8.4 abaqus ENG 6.14 abaqus-6.14 ENG Altair Hyperworks Topography 2.20 hwx ENG Anaconda Python Python Distribution 2.7 python-anaconda ENG 3.4 python34-anaconda ENG BLAST+ Biological Sequence Analysis 2.2.29 ENG ANSYS 13 HFSS EM Simulation 13 ENG Arduino Integrated Development Environment 1.8.3 ENG ARM […]<\/p>\n","protected":false},"author":16541,"featured_media":0,"parent":27,"menu_order":10,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/pages\/138"}],"collection":[{"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/users\/16541"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/comments?post=138"}],"version-history":[{"count":15,"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/pages\/138\/revisions"}],"predecessor-version":[{"id":2969,"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/pages\/138\/revisions\/2969"}],"up":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/pages\/27"}],"wp:attachment":[{"href":"https:\/\/www.bu.edu\/engit\/wp-json\/wp\/v2\/media?parent=138"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}