{"id":200,"date":"2009-06-23T11:57:03","date_gmt":"2009-06-23T15:57:03","guid":{"rendered":"https:\/\/www.bu.edu\/bioinformatics\/?page_id=200"},"modified":"2012-02-01T15:45:34","modified_gmt":"2012-02-01T20:45:34","slug":"participants","status":"publish","type":"page","link":"https:\/\/www.bu.edu\/bioinformatics\/iwbsb_2009\/participants\/","title":{"rendered":"Participants"},"content":{"rendered":"<blockquote><p><a href=\"\/bioinformatics\/iwbsb_2009\/\">Home<\/a> | <a href=\"\/bioinformatics\/iwbsb_2009\/contact\">Contact<\/a> | <a href=\"\/bioinformatics\/iwbsb_2009\/general-information\">General Information<\/a> | <a href=\"\/bioinformatics\/iwbsb_2009\/participants\/\">Participants <\/a>| <a href=\"\/bioinformatics\/iwbsb_2009\/past-workshops\/\">Past Workshops<\/a> | <a href=\"\/bioinformatics\/iwbsb_2009\/program\">Program<\/a><\/p><\/blockquote>\n<h2>Boston University Graduate Program in Bioinformatics<\/h2>\n<h3>Advisor: Professor Daniel Segre<\/h3>\n<ul>\n<li>David Byrne<\/li>\n<li>Hsuan-Chao Chiu<\/li>\n<li>Lina Faller<\/li>\n<li>Niels Klitgord<\/li>\n<li>Varun Mazumdar<\/li>\n<li>Bill Riehl<\/li>\n<\/ul>\n<h3>Advisor: Professor Yu &#8220;Brandon&#8221; Xia<\/h3>\n<ul>\n<li>Eric Franzosa<\/li>\n<\/ul>\n<h2>Charit\u00e9 &#8211; Universit\u00e4tsmedizin Berlin, Institute of Biochemistry, Computational Systems<br \/>\nBiochemistry Group, Berlin<\/h2>\n<ul>\n<li>Jessica Ahmed &#8211; Poster: Design and Analysis of Fragments for Drug Discovery<\/li>\n<li>Raphael Bauer &#8211; Oral Presentation: LaJolla: n-gram based detection of structural RNA features<\/li>\n<li>Stefan G\u00fcnther<\/li>\n<li>Marc Hovest\u00e4dt &#8211; Poster: Analysis of degradation of support fixed peptides by the 20S proteasome<\/li>\n<li>Anja Karlst\u00e4dt &#8211; Poster<\/li>\n<li>Matthias K\u00f6nig &#8211; Poster: Constructing kinetic model of the hepatocyte core metabolism<\/li>\n<li>Robert Lehmann &#8211; Oral Presentation: Mathematical Modeling and Simulation of the Human Apoptosis Signal Transduction Network. <a href=\"\/bioinformatics\/files\/2009\/10\/lehmann.pdf\">Abstract<\/a>.<\/li>\n<li>Robert Preissner &#8211; Poster<\/li>\n<li>Joachim von Eichborn &#8211; Oral Presentation: A knowledge-based approach for predicting protein interaction sites<\/li>\n<\/ul>\n<h2>Freie Universit\u00e4t Berlin, Institute of Chemistry and Biochemistry, Macromolecular Modelling Group, Berlin<\/h2>\n<ul>\n<li>\u00d6zg\u00fcr Demir &#8211; Poster: Kinase-specific phosphorylation sites predicted with linear scoring functions<\/li>\n<li>Aysam G\u00fcrler &#8211; Oral Presentation: Detection of non-sequential structural analogs<\/li>\n<li>Stefan G\u00fcnther<\/li>\n<li>Walter Knapp &#8211; Poster<\/li>\n<li>Florian Krull &#8211; Oral Presentation: Scoring geometries of protein-protein complexes. <a href=\"\/bioinformatics\/files\/2009\/10\/krull.pdf\">Abstract<\/a>.<\/li>\n<\/ul>\n<h2>Humboldt-Universit\u00e4t zu Berlin, Institute for Theoretical Biology, Berlin<\/h2>\n<ul>\n<li>Ilka Axmann &#8211; Oral Presentation: Evolution and function of circadian clock proteins: lessons from bacteria<\/li>\n<li>Martina Fr\u00f6hlich &#8211; Poster: Modeling of water reabsorption through AQP2 regulation<\/li>\n<li>Susanne Gerber &#8211; Poster: Spatial modeling of cation homeostasis in Saccharomyces cerevisiae<\/li>\n<li>Edda Klipp &#8211; Poster<\/li>\n<li>Yuehien Lee &#8211; Oral Presentation: Promoter analysis of genes involved in T-helper cell fate decisions and lineage maintenance. <a href=\"\/bioinformatics\/files\/2009\/10\/lee.pdf\">Abstract<\/a>.<\/li>\n<li>Thomas Spie\u00dfer &#8211; Oral Presentation: Is DNA Replication Rate Independent of Sequence Composition or Length in Budding Yeast? <a href=\"\/bioinformatics\/files\/2009\/10\/spiesser.pdf\">Abstract<\/a>.<\/li>\n<\/ul>\n<h2>Kyoto University Bioinformatics Center<\/h2>\n<ul>\n<li>J.B. Brown &#8211; Poster: New kernel methods embedded with electrostatic potential for compound analysis<\/li>\n<li>David Du Verle &#8211; Oral Presentation: CaMPDB: a resource for calpain and modulatory proteolysis. <a href=\"\/bioinformatics\/files\/2009\/10\/du_verle.pdf\">Abstract<\/a>.<\/li>\n<li>Timothy Hancock &#8211; Oral Presentation: Active Pathway Identification and Classification with Probabilistic Ensembles<\/li>\n<li>Masahiro Hattori &#8211; Poster: Analysis of conserved physicochemical patterns of enzymatic reactions and their ligands<\/li>\n<li>Motoki Shiga &#8211; Oral Presentation: Annotating Gene Functions with Integrative Spectral Clustering on Microarray Expressions and Sequences. <a href=\"\/bioinformatics\/files\/2009\/10\/shiga.pdf\">Abstract<\/a>.<\/li>\n<li>Daichi Shigemizu &#8211; Oral Presentation: Analysis of Chemical Modification Patterns Extracted from KEGG Drug Structure Maps. <a href=\"\/bioinformatics\/files\/2009\/10\/daichi.pdf\">Abstract<\/a>.<\/li>\n<li>Masataka Takarabe &#8211; Oral Presentation: Characterization and classification of adverse drug interactions. <a href=\"\/bioinformatics\/files\/2009\/10\/takarabe.pdf\">Abstract<\/a>.<\/li>\n<li>Takeyuki Tamura &#8211; Poster: Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model<\/li>\n<li>Michihiro Tanaka &#8211; Oral Presentation: Analysis of lipid biosynthesis protein families and phospholipid structural variations. <a href=\"\/bioinformatics\/files\/2009\/10\/m_tanaka.pdf\">Abstract<\/a>.<\/li>\n<li>Toshiaki Tokimatsu &#8211; Poster: Estimating the connectivity in secondary metabolite groups<\/li>\n<\/ul>\n<h2>Max Planck Institute for Molecular Genetics, Computational Systems Biology Group, Berlin<\/h2>\n<ul>\n<li>Nils Christian &#8211; Oral Presentation: TBA Network based function discrimination<\/li>\n<li>Christian Diener &#8211; Poster: Gradient Sensing in the Yeast Pheromone Response<\/li>\n<li>Heike Hameister &#8211; Poster: PCNA acts as a central switchboard during DNA replication and repair<\/li>\n<li>Clemens K\u00fchn &#8211; Oral Presentation: Investigation of Osmoadaptation in yeast. <a href=\"\/bioinformatics\/files\/2009\/10\/kuehn.pdf\">Abstract<\/a>.<\/li>\n<li>Xiaoging Li &#8211; Poster: Structural and kinetic analysis of circadian oscillators<\/li>\n<li>Katrin Tirok &#8211; Poster: Modeling photosynthetic electron transport and its adaptability<\/li>\n<li>Christian Waltermann &#8211; Oral Presentation: Crosstalk in signaling pathways in budding yeast<\/li>\n<\/ul>\n<h2>Max-Delbr\u00fcck Center for Molecular Medicine, Mathematical Cell Physiology, Berlin<\/h2>\n<ul>\n<li>Martin Falcke &#8211; Poster<\/li>\n<li>Jonas Maaskola &#8211; Oral Presentation: Composition &amp; dynamics of small RNA in C. elegans embryogenesis &amp; development. <a href=\"\/bioinformatics\/files\/2009\/10\/maaskola.pdf\">Abstract<\/a>.<\/li>\n<li>Thomas Schendel &#8211; Oral Presentation: Modelling the Ca2+-dynamics in Cardiac Myocytes. <a href=\"\/bioinformatics\/files\/2009\/10\/schendel.pdf\">Abstract<\/a>.<\/li>\n<li>Bianca Sprincenatu &#8211; Oral Presentation: Modelling cAMP and IP3 signalling pathways and their interactions. <a href=\"\/bioinformatics\/files\/2009\/10\/sprincenatu.pdf\">Abstract<\/a>.<\/li>\n<li>Juliane Zimmermann &#8211; Poster: Modelling Actin-based Cellular Motility. <a href=\"\/bioinformatics\/files\/2009\/10\/zimmermann.pdf\">Abstract<\/a>.<\/li>\n<\/ul>\n<h2>Rutgers University<\/h2>\n<h3>Advisor: Professor Gyan Bhanot<\/h3>\n<ul>\n<li>Erhan Bilal<\/li>\n<li>Anupama Reddy. <a href=\"\/bioinformatics\/files\/2009\/10\/reddy.pdf\">Abstract<\/a>.<\/li>\n<\/ul>\n<h2>University of Tokyo<\/h2>\n<ul>\n<li>Seiya Imoto &#8211; Poster: Unraveling dynamics of biological networks towards domputational drug target discovery<\/li>\n<li>Kaname Kojima &#8211; Oral Presentation: A state space representation of VAR models with sparse learning for dynamic gene networks. <a href=\"\/bioinformatics\/files\/2009\/10\/kojima.pdf\">Abstract<\/a>.<\/li>\n<li>Satoru Miyano &#8211; Poster: Cell Illustrator Online and dynamic pathway databases<\/li>\n<li>Atsushi Niida &#8211; Oral Presentation: Expression module networks in various types of cancers. <a href=\"\/bioinformatics\/files\/2009\/10\/niida.pdf\">Abstract<\/a>.<\/li>\n<li>Ritsuko Onuki &#8211; Oral Presentation: New kernel methods for phenotype prediction from genotype data. <a href=\"\/bioinformatics\/files\/2009\/10\/onuki.pdf\">Abstract<\/a>.<\/li>\n<li>Tetsuo Shibuya &#8211; Poster: Faster structural pattern matching algorithms<\/li>\n<li>Matsuyuki Shirota &#8211; Oral Presentation: Development of a meta-score to assess the quality of protein model. <a href=\"\/bioinformatics\/files\/2009\/10\/shirota.pdf\">Abstract<\/a>.<\/li>\n<li>Yoshiaki Tanaka &#8211; Oral Presentation: An assessment of prediction algorithms for nucleosome positioning. <a href=\"\/bioinformatics\/files\/2009\/10\/y_tanaka.pdf\">Abstract<\/a>.<\/li>\n<li>Rui Yamaguchi &#8211; Poster: Exploration of systems changes in gene regulations from time-course gene expression data<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Home | Contact | General Information | Participants | Past Workshops | Program Boston University Graduate Program in Bioinformatics Advisor: Professor Daniel Segre David Byrne Hsuan-Chao Chiu Lina Faller Niels Klitgord Varun Mazumdar Bill Riehl Advisor: Professor Yu &#8220;Brandon&#8221; Xia Eric Franzosa Charit\u00e9 &#8211; Universit\u00e4tsmedizin Berlin, Institute of Biochemistry, Computational Systems Biochemistry Group, Berlin Jessica [&hellip;]<\/p>\n","protected":false},"author":1442,"featured_media":0,"parent":150,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/pages\/200"}],"collection":[{"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/users\/1442"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/comments?post=200"}],"version-history":[{"count":43,"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/pages\/200\/revisions"}],"predecessor-version":[{"id":405,"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/pages\/200\/revisions\/405"}],"up":[{"embeddable":true,"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/pages\/150"}],"wp:attachment":[{"href":"https:\/\/www.bu.edu\/bioinformatics\/wp-json\/wp\/v2\/media?parent=200"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}