COMETS utility scripts

Scripts for reading and extracting parts of the model file:

modelreadMetabolites 

modelreadReactions

modelreadS

Scripts for reading and extracting parts of the layout file:

layoutReadModels

layoutreadMedia

A script to extract the fluxes at a specified time step from saved fluxes file:

fluxattime

Scripts for translation of COBRA and SBML model formats into COMETS format:

Script for general use, will work with any sbml model file, does not add biomass reaction.

cobra2comets_new

Custom script that adds biomass reaction. Must be edited before running it, otherwise will add incorrect biomass reaction.

SBMLtoCOMETSmodel2

Script for conversion of model .mat file into COMETS model format.

MATtoCOMETS