Melissa Marquez, a second-year graduate student in Professor Deborah Perlstein’s group, has recently received a 2017 NSF Graduate Research Fellowship. She earned a Bachelor of Science in biochemistry with a minor in mathematics from Mount Saint Mary’s University and as an undergraduate conducted research in Dr. Eric Stemp’s lab focusing on DNA-protein cross-linking resulting from oxidative damage to DNA. She was introduced to Boston by participating in Tufts University’s NSF Research Experience for Undergraduates (REU) program in the summer of 2013 and worked in Dr. Mitch McVey’s lab where she focused on determining the lethality stages in Drosophila melanogaster Werner Syndrome exonuclease mutants. Along with chemistry, Melissa enjoys serving others in their journey toward their science aspirations. She is currently a fellow for the BU NSF GK-12 Global Change Initiative (GLACIER) program where she works at Pierce School in Brookline with a 6th grade science teacher, an officer for BU Women in Chemistry, and a co-leader of the BU Graduate Women in Science and Engineering (GWSE) Girls with Goggles club, an outreach program that provides weekly hands-on activities for middle school girls.
Through the support of the NSF, Melissa aims to obtain a greater understanding of how iron cofactors are biosynthesized through the cytosolic iron sulfur cluster assembly (CIA) pathway. This system is responsible for iron sulfur (FeS) cluster biogenesis for proteins found outside of the mitochondria in eukaryotic organisms. Essential processes such as DNA replication and repair, transcription, and translation, are all dependent on at least one FeS cluster containing enzyme. A key question is: how are these DNA metabolizing enzymes, also termed targets, recognized by the CIA pathway? Melissa plans to discern the mechanism of CIA target recognition by investigating Cia2, a vital component of the CIA targeting complex known for executing target identification in the last step of the system. Not only is cluster targeting poorly understood for the CIA pathway, but it is not known how any cluster biogenesis pathway identifies its targets. By examining how targets are recognized, this work can provide a model for how target recognition is executed for other cluster biogenesis systems. Melissa is primarily interested in pursuing a career in which she can simultaneously work on innovative experimentations closely related to therapeutic development and reigniting students’ appreciation for deeper learning and, ultimately, love for science.
Dr. Beeler, who has been a tenure track faculty member in Boston University’s Chemistry Department since 2012, was recently awarded a 5-Year early investigator award through the NSF CAREER grant program. The Faculty Early Career Development (CAREER) Program is a Foundation-wide activity that offers the National Science Foundation’s most prestigious awards in support of junior faculty who exemplify the role of teacher-scholars through outstanding research, excellent education and the integration of education and research within the context of the mission of their organizations. Such activities should build a firm foundation for a lifetime of leadership in integrating education and research.
Research in the Beeler Group is very multidisciplinary. They are focused on synthesis and medicinal chemistry of biologically active small molecules by developing efficient and scalable processes to synthesize scaffolds of interest. One of the core components in their research is development of continuous flow technologies to develop photochemical reactions, electrochemical reactions, and reactions utilizing highly reactive intermediates.
With the CAREER award, Dr. Beeler plans to focus his research on the development of powerful flow reactions that will transform the way chemists think about challenging chemical reactions. In parallel to these efforts he will continue expanding our activities in outreach and education to further the growth of Chemistry in STEM education.
The National Science Foundation’s Research Experience for Undergraduates Program supports active research participation by undergraduate students in any of the areas of research funded by the National Science Foundation. For the second time, BU Chemistry has received one of these coveted site awards. Focused on the theme “Fundamental Research in Chemistry Addressing Problems in Biology,” the 3-year program (2012-2015) is led by Professors John Snyder (Principal Investigator) and Linda Doerrer (Co-PI).
The NSF Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBETS) has funded Bjoern Reinhard and his Co-Investigator, Professor Luca Dal Negro (Electrical & Computer Engineering,) to combine the advantageous photonic and plasmonic properties of nanostructured surfaces to develop a multiparametric responder that improves sensitivity and selectivity of conventional biosensing platforms through combined analysis of elastic and inelastic light-scattering processes. The award, “Multiparametric Optical Sensing of Microbes on Plasmonic Nanostructures,” is for $300K over three years.
Professor Larry Ziegler and his group have received continued support from the NSF ($450K over 3 years) to use cutting edge spectroscopic techniques to advance understanding of supercritical fluids (SCFs) as a medium for chemical activity. Using ultrafast vibrational or rotational spectroscopic techniques, they will study the femtosecond to picosecond solvation dynamics of a range of SCF solutions as a function of density for isotherms close to the critical temperature. The insights gained will identify those solvent motions coupled to the spectroscopically tagged solutes in the femtosecond to tens of picoseconds regime providing a dynamical description of solvation in the compressible fluid regime of SCFs. Such dynamics are important to understand, because they are intimately involved in the unique microscopic solvation phenomena that give super critical fluids their interesting and useful properties. Given the very high relevance of supercritical liquids for applied chemistry on the one hand and the lack of detailed knowledge on their microscopic dynamics on the other, this research is expected to provide new and important insight into structural fluctuations and local interactions governing solvation processes and, thus, chemical dynamics.
The Phi Beta Kappa’s Visiting Scholar Program (VSP) offers undergraduates the opportunity to spend time with some of America’s most distinguished scholars. It aims to contribute to the intellectual life of the campus by making possible an exchange of ideas between the Visiting Scholars and the resident faculty and students.
Professor John Straub is one of the 14 scholars selected by the 2011-2012 VSP Committee. Visiting eight schools (five in Fall 2011 and three in Spring 2012), he spends two days at each, giving a public lecture, meeting with undergraduates and faculty members, and participating in classroom discussions and seminars.
The schools on his itinerary are:
- Wake Forest University
- Florida State University
- Colorado College
- University of South Dakota
- Penn State University
- University of North Carolina at Greensboro
- Denison College
- Gettysburg College
Professor Straub’s research focuses on the development and use of mathematical and computational models to uncover the principles governing the fundamental processes of energy transfer, signaling, folding, misfolding, and aggregation that underlie protein function. His excellence as an educator has been recognized by Boston University by Gitner and Metcalf Awards. Committed to scientific outreach and communication, he has served as chair of the Theoretical Chemistry Subdivision of the American Chemical Society and as president of the Telluride Science Research Center, as well as on advisory panels to the Pinhead Institute, the National Science Foundation and the National Institutes of Health.
Disulfide bonds play critical catalytic, structural and signaling roles throughout nature. However, little is known about what governs their reactivity at the molecular level. To gain insights into disulfide bonds, the National Science Foundation, has funded Professor Sean Elliott and his Research Group to use direct electrochemistry to characterize the influence of protein sequence and structure on the redox properties and reactivity of the thioredoxin superfamily.
The 4-year award, which is valued at nearly $700K will provide a new detailed understanding of how thioredoxins are used in Nature to maintain redox homeostasis. The broader impacts of this work will touch deeply on the interface of chemistry and biology. Whether in plant biochemistry, bioenergy sciences or microbial physiology – thioredoxins will provide insights on how disulfide bonds are used to achieve chemical change in life.
Illuminating this process in a fundamental way will translate into new appreciation of fundamental biology. At the same time, the research will advance the training of at all levels (undergraduates, graduate students, post-doctoral faculty fellows) to think quantitatively and chemically in the field of redox biochemistry.
As theoretical chemists John Straub and his Research Group apply mathematical statements of basic physical laws to accurately simulate known phenomena, and then from this basis, make predictions about the unknown. The intellectual challenge they face is first choosing the appropriate mathematical description of a problem that embodies its basic physics, and then coming up with an elegant way to implement it in a calculation that will illuminate the phenomenon.
In June, 2011, the group was funded by the National Science Foundation (NSF) to determine the “Algorithms for the simulation of strong phase changes in complex molecular systems” (CH-1114676, $600K over 3 years). This continuing award from the Chemical Theory, Models and Computational Methods program in the NSF Chemistry division is to develop algorithms for the simulation of molecular systems undergoing strong phase transitions, including the characterization of metastable and unstable states.
The group has developed generalized simulated tempering and replica exchange algorithms which exhibit superior scaling and sampling efficiency for a series of benchmark systems. In this work, they are extending and generalizing these algorithms to simulate a variety of outstanding problems, including vapor-liquid phase change in simple fluids, freezing of nano-confined water, and the aggregation and assembly of peptides into functional channels. Phase changes, such as the melting of ice or evaporation of water, are ubiquitous in nature but are very difficult to simulate on a computer. This research enables scientists and engineers to model nature more realistically.
John Straub is also involved in science outreach activities in collaboration with the Pinhead Institute, a non-profit group devoted to K-12 science education and outreach to the economically and ethnically diverse population of Southwestern Colorado. This grant from the National Science Foundation will help support Pinhead’s Scholars in the Schools program, that bring scientists to the region for middle and high school visits, and the Pinhead Internship Program, through which talented students from the region are supported in carrying out summer research in laboratories across the US, including Boston University.
The Boston University Department of Chemistry has received funds from the NSF MRI program to acquire a Circular Dichroism (CD) Spectrometer, which will enhance the research of scientists in several departments encompassing biological and organic chemistry.
In addition to the Principal Investigator, Professor Karen Allen, there are five major users at BU whose research will benefit from this instrument and more than ten other scientists whose research capabilities will be significantly advanced.
The new CD spectrophotometer will be housed in the Chemistry Instrumentation Center (CIC) located in the Boston University Chemistry Department and headed by Dr. Norman Lee, who will manage the acquisition and integration of the new instrument. Dr. Jeffrey Bacon will oversee the instrument’s maintenance, user training, and data collection.
The results of the research that use the CD will be disseminated broadly to enhance scientific and technology understanding. At the same time that it advances discovery and understanding, the new CD will promote training in the analytical training of physical properties of organic and inorganic molecules at both the graduate and undergraduate levels in Chemistry and Biology Departments and in the Biochemistry and Molecular Biology program.