Category: Snyder, John
Professors Snyder and Abrams collaborate with colleagues in Biology and Neuroscience to create novel, interdisciplinary courses: Integrated Science Experience 1 & 2
Interdisciplinary, Integrated Course Ideas Receive Provost Grants
Chemistry faculty, John Snyder and Binyomin Abrams, in conjunction with colleagues in the Departments of Biology (Kathryn Spilios and John “Chip” Celenza) and Neuroscience (Paul Lipton and Lucia Pastorino) have successfully proposed ideas to develop integrated, inquiry-based laboratory courses for first and second year biology, chemistry, and neuroscience students. Jointly funded by the Office of the Provost, the Center Teaching & Learning, and the College of Arts and Sciences, these interdisciplinary course development grants aim to promote faculty and student collaboration across disciplines in support of innovative, research-oriented undergraduate laboratory education. The new courses that are being developed, Integrated Science Experience 1 (ISE 1, for second semester freshmen) and ISE 2 (for first semester sophomores) will facilitate students making connections across biology, chemistry, and neuroscience early in their undergraduate careers. Such interdisciplinary insights will better prepare for advanced courses and undergraduate research. Developed in 2015 and 2016, ISE 1 and ISE 2 were piloted in the Spring and Fall 2016 terms, respectively.
Interdisciplinary Science Experience 1
The first-semester ISE1 course was piloted in the Spring 2016 semester. Forty students with majors ranging from biology to philosophy engaged in a semester-long study focused around characterizing the kinetics of tyrosinase-catalyzed production of L-Dopa and screening of small-molecule inhibitors. The labs integrated teaching on the basics of instrumentation, lab practices/skills, research practices in STEM, working with scientific literature, and writing in the sciences, while synthesizing information related to chemistry, biology, and neuroscience.
Interdisciplinary Science Experience 2
A pilot of this first semester, sophomore program began this fall semester (2016) supported by Boston University. In this program, eleven students enrolled in Organic Chemistry 1 (CH 203), and Cell Biology (BI 203 or 213) or Neuroscience I (NE 203) work on a specific project that combines labs in both Organic Chemistry and Cell Biology, with an emphasis on Neuroscience, modeling a drug discovery effort for Alzheimer’s disease. This project, which was organized as a graduate level research group would be, with weekly group meetings replacing pre-lab lectures, focused on the isolation of curcumin from turmeric, and the synthesis of specific analogues in the organic chemistry lab, with parallel biological experiments probing the activities of these compounds as relates to Alzheimer’s dementia. Curcumin has a well-validated biological activities to launch the biology lab. The analogues prepared in the organic lab were selected for their practicality of preparation at the sophomore level, as well as to probe specific structural features of curcumin that might be responsible for the activity. In addition, the procedures in both labs were designed as an educational vehicle that would greatly enhance the lectures in Organic Chemistry 1, Cell Biology, and Neuroscience. This pilot program culminated with students designing their own capstone projects in both the chemistry and biology labs.
Professor Snyder said “The results from our first year experience have been even better than expected. New analogues of curcumin have been prepared, and the biological effects of these analogues have never been reported before. We are now seeking funding from the AAU to expand this pilot project with a second, research oriented project centered around capsaicin, the ‘hot’ ingredient of habanero which has also been implicated as having beneficial neurological effects.”
The Chemistry Department is one of the most active research departments at Boston University. With 24 research active faculty involved in many different focus areas, we are committed to a research active learning environment where our faculty and students are afforded the opportunity to do cutting edge chemical research. In order to continue to build on our strong research focus, our faculty have submitted over 30 grant proposals during the 2015-2016 academic year, with 20 of them being awarded totaling over $5 million in new funding this year alone.
Below is a list of the awarded grant proposals as well as their abstracts. For more information about the Faculty member who will the the Principal Investigator please click on their name.
Boston University Chemistry Department Awarded Grants Academic Year 2015-2016
Scott Schaus, National Institute of Health / National Institute of General Medical Science
Enantioselective Catalytic Boronate Reactions
The development of new chemical methodologies is an important objective of organic synthesis. An area that continues to inspire chemists is the chemistry of organoboranes and boronates. The unique properties of boron and the ability to activate organic boronates to deliver carbon nucleophiles has yielded an impressive array of chemical methods and processes. We will extend the ability of organoboranes and boronates to deliver carbanion equivalents in novel condensation reactions including chemoselective carbonyl condensations and multicomponent reactions. The reactions will be rendered asymmetric through the development of asymmetric catalysts and chiral boronate reagents and the utility of the methods developed demonstrated by the asymmetric synthesis of pharmaceuticals and natural products. Significant advances have been made in the mechanistic understanding of boronate activation via ligand exchange with chiral diols. We will use the mechanistic insight we have obtained to expand the repertoire of reactions catalyzed by dynamic ligand exchange processes to include acyl cyanides as electrophiles, borono-Petasis reactions, and ortho-quinone methide chemistry. Our continued interest in reaction discovery has led to the identification of chiral diol acid catalysts capable of promoting the enantioselective addition reactions to acetals. We seek to explore this reactivity and expand it to include types of functionalized nucleophiles in additions to oxoniums and iminiums and boronate hetero-Diels–Alder reactions. Goals of the research program include developing a breadth of reactivity, providing access to novel chiral blocks, and new reaction development. Bond constructions are selected to access chiral synthetic intermediates that could be used in the construction of pharmaceuticals and natural products. The results will transform the way boronate nucleophiles are utilized in enantioselective synthesis.
John Straub, National Institute of Health
Probing the role of membrane and cholesterol on APP-C99 structure and dynamics
Aggregation of proteins of known sequence is linked to a variety of neurodegenerative disorders. Familial mutations in the Amyloid Precursor Protein (APP), from which the amyloid β (Aβ) protein associated with Alzheimer’s Disease (AD) is derived, have been linked with the early onset of amyloid disease.
With this computational and theoretical research grant, augmented by synergistic experimental research collaborations, we will determine the structure and dynamics of the 99 amino acid transmembrane fragment of APP (APP-C99) in membrane environments in order to address fundamental biophysical questions articulated in three Specific Aims. (1) We will explore how length, sequence, and membrane composition influence the structure of the APP-C99 monomer. (2) The structures of APP-C99 dimers and the associated stability as well as the monomer-dimer equilibrium are also influenced by membrane composition and C99 sequence. We will investigate the influence of these environmental factors on the structure and dynamics of dimer formation. (3) We will also determine how APP-C99 interacts with cholesterol and cholesterol-analogs, as well as how those interactions influence APP-C99 structure and dimerization.
Plasmonically Enhanced Stimulated Coherent Spectroscopy
There is growing interest in using plasmonics to enhance and control chemistry on surfaces for applications such as chemical catalysis, pollution mitigation and energy conversion. The proposed time-domain experiments are aimed at developing a better dynamical and structural description of how molecules interact with plasmonic materials. Differences in energy fluctuation timescales, interaction strengths and energy distributions are anticipated for molecules on plasmonic surfaces as compared to molecules in liquid solutions. Characterizations of these properties are central to understanding chemical activity occurring on these substrates. Plasmonically enhanced stimulated coherent vibrational and electronic spectroscopic measurements of analytes on plasmonic substrates will be obtained to learn about these interactions. Fabricated metal nanoparticle cluster arrays will be employed here. This substrate type provides a wide range of design parameters that will be used to maximize signal strengths and robustness for the planned studies. The proposed research effort will be carried out by two Boston University PIs with complementary expertise in ultrafast spectroscopy and nanoscience.
Tom Tullius, National Science Foundation
Chemical probing of RNA tertiary structure in a whole transcriptome at single‐atom resolution
RNA (ribonucleic acid) is now widely appreciated to be a key participant in nearly all of the activities of the cell, yet we have limited information on the three-dimensional structures of most RNA molecules. This presents a challenge, because we know that the biological function of an RNA molecule depends on its structure. To understand the relationship between structure and function for the large number of RNA molecules that populate the cell, new high-throughput experimental approaches for structure determination are needed. The aim of this project is to develop a new experimental method that can provide detailed information on the three-dimensional folding of all the RNA molecules in a cell, in one experiment. The new method combines chemical probing of RNA structure by the hydroxyl radical, the quintessential Reactive Oxygen Species, with analysis by high-throughput sequencing, so that the structures of all RNA molecules in a cell can be monitored simultaneously.
John Porco, National Institute of General Medical Science
Chemical Synthesis of Complex Natural Products for Translational Science
The National Institutes of Health, Institute of General Medical Sciences (NIGMS), has awarded Professor John Porco and coworkers (http://sites.bu.edu/porcogrp/) a five year MIRA (R35) grant entitled “Chemical Synthesis of Complex Natural Products for Translational Science.” The Maximizing Investigators’ Research Award (MIRA-R35), an Outstanding Investigator Award, is a grant that provides support for all of the research in an investigator’s laboratory that falls within the mission of NIGMS. Within these bounds, investigators have the freedom to explore new avenues of inquiry that arise during the course of their research. The goals of the MIRA (R35) research program are to continue chemical syntheses of bioactive molecules and expand efforts and capabilities in translational science. The MIRA effort effectively replaces two previous NIGMS-funded RO1 grants (Biomimetic Synthesis of Complex Natural Products (GM-073855) and Chemical Synthesis of Bioactive Flavonoid and Xanthone-Derived Natural Products (GM-099920) which were highly productive and led to 41 publications from 2010 – 2015. As part of the MIRA project, the Porco group will continue development of novel synthetic methodologies for concise entry to bioactive classes of natural products including oxaphenalenones, meroterpenoids, polyprenylated acylphloroglucinols, tetrahydroxanthones, and dimeric chromones. The project will also continue major emphasis on collaborations to study biological properties and mode of action (MoA) of target molecules for ultimate use as pharmacological therapies for human cancers as well as viral and bacterial illnesses.
Malika Jefferies-EL, National Science Foundation
Early Career Investigator Workshop
In an effort to develop the next generation of Chemistry researchers, the National Science Foundation Division of Chemistry has sponsored the proposal of Professor Malika Jeffries-EL and co-PI Jeff Moore for the University of Illinois-Urbana Champagne to hold an NSF Chemistry Early Career Investigator Workshop. The objective of these workshops is to provide early career chemist with networking opportunities and relevant information needed to better assess their research ideas, projects, and plans so as to more effectively compete for grant applications to the NSF CAREER program, other NSF programs and other federal agencies. The workshop was held March 10th-11th 2016 in Arlington VA at the Hilton Garden Inn, which is close to the NSF headquarters, enabling the participation of many program officers. The workshop is had approximately 120 participants and will be open to investigators performing research in NSF-supported disciplines within the United States. While the workshop is primarily intended for junior faculty members, advanced graduate students, postdocs, and other research scientist.
Ksenia Bravaya, Boston University
Patrick Mclellan Leavitt Research Award
This award is designed “to support research of one or more non-tenured junior faculty members, or graduate students, in chemistry or biology at the College of Arts and Sciences. Preference shall be given to female faculty who demonstrate a commitment to encouraging women to study science, or to female graduate students.”
Dr. Bravaya will use these funds to support her research into challenging electronic structure phenomena in biomolecules and systems relevant for materials, which include photoinduced processes, autoionizing electronic states, and magnetic field effects. This award will help her and her team use and develop high-level electronic structure methods targeting processes involving multiple electronic states, chemistry of open-shell species in magnetic fields, and electronically excited and metastable systems.
Mark Grinstaff, National Science Foundation
SusChEM: Glycerol Polycarbonates as New Biomaterials
The future development of medical devices. Scientific advances, such as those described in this NSF sponsored research, will support US industries, which play an important role in this medical polymers market estimated to exceed $3.5 billion by 2018. This grant support undergraduate students and graduate students, who will benefit from an interdisciplinary cutting-edge research and educational experience that encompasses training in biomaterials and polymer chemistry. Students will be encouraged to think independently and creatively while recognizing the importance of collaborating with other experts (e.g., materials scientists, pathologist, biomedical engineers, and patent lawyers). These activities will contribute to positive societal outcomes by fostering excitement for basic research while educating and training a future workforce.
In the biomaterials and biomedical field, degradable polymers such as poly(lactic acid) and poly(glycolic acid) are widely studied and are an integral component of many medical device products. Although extensively used, these poly(hydroxy acid)s possess a number of limitations including: 1) limited capability for backbone functionalization; 2) acidic products upon degradation; and 3) poor control over molecular weight and dispersity. Consequently, there is significant need for new polymeric biomaterials that are amenable to facile modification, multiple processing or manufacturing methods, and controlled degradation without the generation of a local acidic environment. With NSF funding, the PI (Grinstaff) and his team will design, synthesize, and evaluate of a novel class of natural metabolite-based, non-toxic, and biodegradable polymeric materials based on a polycarbonate of glycerol. The activities in this highly interdisciplinary and cutting-edge research environment will also afford educated and trained undergraduate and graduate students for employment in industry and academia.
Mark Grinstaff, Samsung
Basic Research on New Ionic Liquid Electrolytes: Synthesis
This basic science research project directed by Professor Grinstaff investigates his interest in new ionic liquids as potential electrolytes for Li ion batteries. Given his interest and past publications, Samsung has reached out to sponsor this project. Specifically, the Grinstaff laboratory will synthesize a small library of 10 new phosphonium and piperdium ionic liquids. We will mix these ionic liquids with differing Li salts and characterize the thermal properties, viscosity, conductivity, and electrochemical window of these electrolyte compositions.
Mark Grinstaff, MIT/Comm. Of Mass
Translation of a Hydrophilic Coating for Latex Condoms: The HydroGlide Coating
The HydroGlide Coating is a novel and stable hydrophilic coating on latex condoms that can maintain its lubricity when in contact with water. This technology will promote consistent and proper condom usage, while improving user satisfaction. The goal is to translate this novel latex coating technology to the market through collaboration with Biocoat Incorporated who will optimize this coating prototype towards one that is adaptable towards large-scale manufacturing under GMP.
Bjoern Reinhard, Millipore
Plasmonic Nanofilters For Viral trapping and inactivation
This award will go towards research into creating plasmonic metamaterials to develop a novel class of photonic filters that are capable of selectively trapping and inactivation of viruses. Several complementary technology developments, ranging from state-of-the-art electron-beam lithography, fabrication methods combined with simulation and design will be aimed at developing 21st century adaptive filters for biopharmaceutical applications. Evaluation of the Optical gradient forces in fabricated membranes will be combined with multi-physics modeling that include both plasmonics and hydrodynamics. Experiments on fluid feed materials and virus systems selected by EMD will be performed to characterize selective trapping. Data will be shared openly between BU and EMD, under NDA. An assessment of manufacturability, scalability will be performed in close consultation with engineers and scientists at EMD.
Bjoern Reinhard, BMC Corp.
Nanoplasmonic Metamaterial Filters
This project explores the mechanism underlying virus inactivation through laser irradiation.
Bjoern Reinhard, National Cancer Institute
Illuminating Dynamic Receptor Clustering in the Epidermal Growth Factor Receptor
Dysregulation of members of the epidermal growth factor (EGF) receptor (EGFR) family is associated with oncogenesis and tumor growth. Due to its relevance in cancer development, EGFR is an important target in cancer drug discovery, and several EGFR targeted therapies have already been developed. Their clinical success has, however, often been modest, reinforcing the need for a more complete understanding of the EGFR signaling pathway. This proposal focuses on the insufficiently understood role of large-scale EGFR associates (“clusters”) in signaling initiation and transduction, in particular. While it has long been known that ligand induced dimerization plays a critical role in receptor signaling, there is growing evidence that this textbook model needs to be augmented to account for the heterogenous lateral distribution of the receptor in the plasma membrane. The local enrichment of the receptors in ”micro-domains” or ”nanoclusters” could strongly affect cooperative receptor interactions and shift the local EGFR association equilibria through a local concentration effect. The experimental investigation of the fundamental mechanisms underlying the large-scale receptor organization with conventional fluorescence microscopy remains challenging, due to the method’s limitation with regard to throughput, spatial and temporal resolution, and maximum observation time. Plasmon Coupling Microscopy (PCM) is a novel non-fluorescence based approach that uses electromagnetic interactions between noble metal nanoparticles (NPs) to investigate receptor clustering on subdiffraction limit distances (but beyond the spatial barrier o Fluorescence Resonance Energy Transfer, FRET). NP’s do not blink or bleach, are very bright, and can be imaged in a conventional widefield microscope. Consequently, PCM facilitates the monitoring of EGFR clustering without limitations in observation time in many individual cells simultaneously. This competitive renewal builds upon the plasmon coupling based tools developed in the previous funding cycle and outlines a vigorous research plan to elucidate the structural origin of dynamic EGFR clustering. PCM will then be applied to test the hypothesis that receptor clustering regulates the mode and strength of signaling and to elucidate the mechanisms underlying a spatial regulation of signaling intensity and outcome. The obtained insight will improve the understanding of spatial regulation mechanisms for a broad range of receptors. Noble metal NPs are not only superb optical labels for characterizing EGFR clustering in the plasma membrane, but they also represent potential therapeutic tools to restore and enhance negative EGFR signaling after covalent attachment to EGF. This hypothesis is experimentally tested in this proposal. If successful, this strategy would provide a new approach for overcoming apoptosis evasion in cancer.
Research For Undergraduates Program: Chemistry Research Addressing Biological Problems
This REU site will afford 30 undergraduates (10 per summer) the opportunity to engage in cutting edge, basic chemical research projects that address biological problems. REU students can choose from among 24 groups in BU’s Departments of Chemistry, Biology, or Biomedical Engineering. They will work in newly renovated laboratories, have access to the synthetic and computational resources of BU’s leading research centers, and be trained on state-of-the art instrumentation. The goal of the program is to provide undergraduates from 4-year colleges and community colleges who have limited or no research opportunities at their home institutions with an intensive, interdisciplinary research experience. At least 50% of the participants will be from community colleges with no research opportunities at their home campuses. The demographic aim is to have at least 70% of the students to be underrepresented minorities and at least 50% to be women. The program will also give preference to veterans applying from the target institutions. By fully integrating the REU students into the daily life of the laboratories and through mentoring by faculty, graduate students, and postdoctoral research associates, the REU students will fully experience the breadth of chemistry research and be motivated to pursue careers in science.
Mark Grinstaff, L-Oreal
Poly-amido-saccharide (PAS) Biomaterials for Cosmetic and Beauty Applications
This project will explore a new class of polysaccharides, recently reported, for their properties as new materials as well as their biological activity in anti-ageing and/or preservatives and/or photoprotection and/or depigmentation.
Aaron Beeler, National Science Foundation CAREER
Chemical Transformations Enabled by Flow Chemistry
This award funds specific projects that are integral to the long term development of the Beeler Research Group. The overarching objective of our research is synthesis of small molecules that are used as tools to study human diseases. To achieve these goals we have identified a number of reactions that are highly enabled by flow chemistry. The scientific projects outlined in this proposal will result in sigfnificant advances toward the synthesis of a number of important biologically active molecules. Furthermore, the projects will provide advancements in flow chemistry that will enable chemists in acadmia and industry to implement a number of challenging reactions. The education projects in the proposal will provide training for undergraduates in flow chemistry, which is emerging as a critical technology in industry. The outreach projects will provide high school students from a wide range of socioeconomic backgrounds with a foundational path toward STEM higher education and careers. The first Aim is focused on expanding the utility of our flow photochemistry platform to develop reactions that will be highly useful in synthesis and medicinal chemistry. The second Aim is to develop a platform that is capable of milligram to multigram scale electrochemical reactions in flow. The third Aim will utilize highly reactive diazoalkanes in a Buchner reaction to access complex scaffolds. The proposal also outlines our continued involvement in outreach and education, including the Upward Bound program at Boston University to educate local high school students in chemistry, developing a summer camp for high school students, and integrating flow chemistry into the undergraduate laboratory curriculum.
Debbie Perlstein, National Science Foundation CAREER
Elucidating the role of ATP in cytosolic iron sulfur cluster biogenesis
Dr. Perlstein’s research focuses on how metals are mobilized and monitored within the cell so that they get to where they need to go and do not end up in places they shouldn’t. With this new five-year grant, Dr. Perlstein plans to unravel the molecular mechanism by which iron-sulfur cluster cofactors are assembled in the cytosol of eukaryotic organisms. Since inhibition of this first step in cluster biosynthesis can lead to defects in DNA replication, DNA repair and protein synthesis, she expects this work will provide new insight into how cluster biogenesis affects these other fundamental biochemical pathways.
With the CAREER award, Perlstein also plans to develop new undergraduate course curriculum as well as building on current STEM outreach program efforts to begin training the next generation of scientists.
Mark Grinstaff, Brigham & Women’s
Efficacy and Safety of a Novel, Implantable Drug-Eluting Film in Sarcoma
Despite aggressive multimodality therapies combining surgery, radiation, and/or chemotherapy, mesothelioma is essentially a universally fatal cancer with the majority of patients succumbing to local recurrence. To date, there is no effective cure for this disease or means to prevent recurrence. Consequently, new approaches, biomaterials, and mechanisms to deliver pharmacologically active agents are needed. In the current proposal, we utilize a murine model of human mesothelioma to investigate a new approach to reduce intracavitary tumor recurrence with the delivery of chemotherapy via unique tumor localizing polymeric nanoparticles (NPs) administrated locally at the time of surgical resection. The particle localizes to tumor in situ where upon endocytosis these “expansile” nanoparticles (eNPs) undergo a pH dependent transformation and swell from 100 nm to 1000 nm in diameter thus releasing the encapsulated chemotherapeutic agent intracellularly and acting as a drug depot, or reservoir, to deliver high local drug concentrations. Uniquely, expansion of eNPs also results in a functional depot whereby subsequently delivered intracavitary chemotherapy is concentrated inside eNP with prolonged delivery in situ at the sites of tumor where eNP accumulate. This is in contrast to conventional polymer delivery systems that degrade (e.g., poly(lactic-co-glycolic acid) particles), and result in burst release of their drug payload. We hypothesize that these eNPs will, via this unique mechanism, afford a higher intracellular concentration of paclitaxel (Pax), with greater efficacy in the prevention of local recurrence of mesothelioma after surgery that is superior to standard resection or Pax alone without adversely affecting healing at the surgical site. Importantly, we have data demonstrating that eNPs are readily internalized by cancer cells, act as a drug depot, and are superior to the standard Pax-Cremaphor formulation in preventing microscopic malignant disease in vivo.
Mark Grinstaff, NIH
Dissolvable Hydrogel Dressing for the Treatment of Burns
This will study the synthesis, characterization, and evaluation of a hydrogel dressing that dissolves and can be easily removed from the wound surface of a patient with second degree burns with no further trauma. Burns are one of the most common and devastating forms of trauma. Each year, more than 300,000 people die from fire-related burn injuries and millions suffer from burn-related disabilities and disfigurements with psychological, social, and economic effects on both the survivors and their families. Dressing removal is reported to be the time of most pain (after the burn itself) and opioids continue to be the mainstay of treatment for the burn patient. The duration of a burn dressing change in a typical injury requiring ICU/OR level care is often at least 60 minutes with induction of general anesthesia, which can extend to more than three hours depending on the case. At present, all clinically approved available dressings adhere to the wound surface so that each change of dressing leads to traumatization of newly formed tissues on the outer layer of the body’s surface, delayed healing, and great personal suffering for the injured patient. The proposal describes a thiol terminated dendron and a bifunctional NHS-activated PEG that react with each other to form a thiolester linked hydrogel dressing that can be subsequently dissolved by exposure of an aqueous thiol solution via a thiol-thiolester exchange mechanism. These experiments will test the hypothesis that a hydrogel-based, dissolvable burn dressing will provide a barrier to infection, promote wound healing, and be easily removable on demand. Importantly, it presents preliminary data demonstrating the synthesis, characterization, and performance of a dissolvable hydrogel dressing prototype.
Tuning directionality for CO2 reduction in the oxo-acid:ferredoxin superfamily
Exploiting catalytic chemistry for bioenergy production requires a detailed understanding of the molecular mechanisms of multi-electron redox processes, particularly those that transform/capture CO2. Understanding the molecular details of these complex reactions is a major challenge in modern energy science, particularly in the context of CO2 transformations, and the way in which bacteria and archaea capture CO2 for biomass. Here, we have focused on the remarkable catalysts used by nature to achieve either the oxidative liberation of CO2, or its formal reduction (and capture) in the form of useful intermediaries en route to biomass.
The enzymes that achieve CO2 reductions are highly powerful catalysts; yet very little is known about how they work, nor how they can be tuned to favor CO2 reduction chemistry. Through the completion of the project, this knowledge gap will be addressed in the context of the enzymatic chemistry of the oxo-acid:ferredoxin oxidoreductase (OFOR) superfamily, which is capable of CO2 reduction. We believe that our studies of the OFOR superfamily will reveal the molecular details of how nature biases the reactivity of an enzyme to preferentially reduce CO2. These efforts will yield foundational knowledge that will be broadly applicable to marrying the thermodynamics of redox reactions to atomistic information of enzymatic mechanism. We will examine a series of OFOR enzymes through three Aims over a 3-year period.
Undergraduate student Tyler Casselman, a rising Junior doing research in Prof. John Snyder’s laboratory, is the 2016 recipient of the Laursen Summer Research Scholarship (LSRS). Tyler’s summer research continues his investigations in the Snyder group into a synthesis of drug transport within a polymer. His work focuses on developing a procedure to integrate a highly reactive ring system, known as a tetrazine, into polymers. This has an immediate application to drug transport within a polymer via a cycloaddition, which will further the research of the Snyder Group.
Tyler, who is 21 and comes from East Amherst, New York, is interested in natural product synthesis and diversification methods. Once done with his undergraduate education here at BU he plans to continue his study chemistry in graduate school and is hoping to stay in the Boston area.
The scholarship is funded by the Laursen Endowment, which was created to honor Prof. Emeritus Richard Laursen by his former students. The goal of the Laursen Endowment is to advance the training of highly qualified BU chemistry students interested in pursuing scientific careers by providing salary support pursue research during the summer term.
BU Chemistry is pleased to announce a 3-year renewal of funding for our NSF Research Experiences for Undergraduates (REU) Program. This summer program, hosted by the Chemistry Department, provides students from primarily undergraduate institutions with opportunities to work in advanced research laboratories. Of the 33 students who participated in the program over the past three years, 75% came from underrepresented minority groups, better than 60% were women, and more than 50% came from community colleges. Many of them co-authored peer-reviewed publications, presented their findings at conferences, and/or decided to attend graduate school, including BU. Another measure of the program’s success is its ever-expanding pool of applicants, with over 1,000 applications received for the summer 2015 program alone.
Chemistry would like to give special recognition to the efforts of Professors John Snyder, Principal Investigator (PI), and Linda Doerrer, co-PI, whose hard work and commitment to the program made this renewal possible.
The Chemistry Department is accepting applications now for the Summer 2016 session. For more information, visit the BU Chemistry REU.
The National Science Foundation’s Research Experience for Undergraduates Program supports active research participation by undergraduate students in any of the areas of research funded by the National Science Foundation. For the second time, BU Chemistry has received one of these coveted site awards. Focused on the theme “Fundamental Research in Chemistry Addressing Problems in Biology,” the 3-year program (2012-2015) is led by Professors John Snyder (Principal Investigator) and Linda Doerrer (Co-PI).
BU Chemistry has dramatically improved the undergraduate organic chemistry laboratory by giving students access to major research instrumentation and state-of-the-art technology. By enabling more modern experimentation, these resources foster critical thinking and problem solving skills that prepare undergraduates for graduate and pre-professional schools or for careers in industry. Advanced experimentation also enables more sophisticated student-designed research-type projects.
Renovations and instrumentation
Renovations in the Metcalf Center for Science and Engineering (Summer 2011) have transformed our organic chemistry instructional laboratories into an 6,350 sq. ft. suite with fume hoods and bench areas for each student, auxiliary support space, and a chemical stockroom. Space has been dedicated for an undergraduate instrumentation center for with fully automated high field nuclear magnetic resonance (NMR), ultra-performance liquid chromatography–mass spectrometry (UPLC-MS), Fourier transform infrared spectroscopy (FT-IR), and gas chromatography-mass spectrometry (GC-MS). Microwave reactors allow for rapid reaction rates, enabling multistep syntheses to be undertaken in a single day.
Advanced Technology in the Laboratory Curriculum
The entire laboratory curriculum of our sophomore-level organic chemistry sequence has been transformed with the adoption of the “paperless laboratory” through the use of electronic laboratory notebooks. Spearheaded by Professor John Snyder and Professor Scott Schaus and Postdoctoral Faculty Fellow, Seann Mulcahy, integration of these technology resources have enabled the creation of an open-access repository of laboratory protocols, design of laboratory experiments that facilitate sharing of data between students and between disciplines, exposure to automated NMR, GC-MS, and UPLC-MS, and remote download and manipulation of spectroscopic data.
- Fast Forward to the 21st Century -The new instrumentation advances undergraduate capabilities well beyond those in traditional sophomore organic textbooks that repeat traditional experiments. Instead, we have designed novel, research-oriented, exploratory experiments that have applicability to modern organic chemistry. These include cross-coupling experiments, olefin metathesis, and many others. Experiment protocols are available on BU’s Digital Common site (DCommon), an open-access online repository that is accessible not only by our students, but by outside instructors as well. Users can be granted upload privileges to deposit modified or new protocols thereby creating a rich resource to the worldwide research community. In addition, a DCommon collection of NMR and UPLC-MS spectra is being compiled as a teaching tool for organic chemistry courses.
- Major Instrumentation – BU is unique in using the latest instrumentation for routine, hands-on training at the sophomore level. The laboratory’s state-of-the-art instrumentation also allows comprehensive characterization of synthetic material prepared in each experiment. Students now routinely run 1H and 13C NMR (and 2D COSY), UPLC/MS, GC/MS, and FT-IR on their own samples and to obtain a set of data which approaches the quality needed for publication.
- Into the Cloud – Our students are now using fully electronic laboratory notebooks, which they populate on their laptops with reaction details, procedural notes, and safety protocols. Analytic data and spectra (manipulated and interpreted remotely) are uploaded into the notebook and serve as part of their final laboratory reports.
CMLD-BU researchers Bradley Balthaser, Meghan Maloney, Aaron Beeler, John Porco & John Snyder, in a paper published in the journal Nature Chemistry [23 OCTOBER 2011 | DOI: 10.1038/NCHEM.1178], present a new approach to accessing new, biorelevant structures by “remodeling” natural products. In this case, they demonstrate how the natural product derivative fumagillol can been remodeled to access a collection of new molecules using highly efficient chemical reactions.
Boston University Chemistry has launched a new Digital Common site for organic chemistry teaching lab protocols. According to Prof. John Snyder, “developing a freely accessible, dynamic data base of sophomore organic lab experiments was driven by the reality that we were creating most of our sophomore course labs rather than relying on a lab textbook. In fact, many colleges and universities are doing the same. As PFFs from our department have gone on to faculty positions, the potential for having a large number of talented contributors to the database became rather obvious.” Early users / contributors include PFF alumna Prof. Amy Bradley (Wilkes University) and Prof. Lauren Rossi (Roger Williams University). Instrumental in developing the free access database is current PFF, Dr. Seann Mulcahy.
The BU Digital Common is an open access repository, which means that the full text of the work deposited here is freely accessible to the world via the web. BU Chemistry organic lab instructors have placed protocols developed over the years to be freely and easily accessible to other instructors. Users can download and modify these protocols to use in their own courses as they see fit. Users may also be granted upload privileges to deposit modified or new protocols that will be of use to the world-wide teaching community.
The Ignition Award Program provides funds to evolve BU research to the stage where it can be licensed, form the basis of a new company, or be used to create a new, non-profit social enterprise. In June 2010, two Chemistry faculty, John Porco and John Snyder, received these highly competitive awards for their respective commercially promising projects.
Professor Porco’s research is the “Development of Novel Protein Synthesis Inhibitors as Chemotherapeutic Agents.” The work will involve synthesis of novel silvestrol (rocaglate) derivatives and their evaluation as protein translation inhibitors in the Pelletier laboratory at McGill University. Promising derivatives will be tested in the National Cancer Institute’s 60 cancer cell line panel and then advanced to animal models for B-cell leukemias and other cancers that are highly susceptible to translational control.
Professor Snyder’s research focuses on the “Development of New Anti-Tuberculosis Agents.” Three synthetic compounds from the Center for Chemical Methodology and Library Development (CMLD-BU) were determined to be “hits” against Mycobacterium tuberculosis, the tuberculosis-inducing microorganism. The preliminary biological activity data against M. tuberculosis, coupled with the unique structures of the lead compounds have justified advancing these compounds toward commercialization through the biological assays needed to establish the scope of activity and bioavailability.
Snyder Recognized for Excellence in Student Advising
For the second year in a row, a member of the Chemistry faculty has received the Templeton Prize for Excellence in Student Advising, the top undergraduate advising award given by the College of Arts and Sciences.
The 2009 recipient is Prof. John Snyder. Despite his busy schedule which involves teaching, research, and management of two NSF summer undergraduate research programs, this dedicated advisor and mentor is always available to meet with undergraduates. One student related that “Anytime I have a problem, personal or academic, Dr. Snyder was right there and took the time to give me advice and help. He even went out of his way to find me a scholarship for the summer so I could take two classes that I wouldn’t have been able to afford otherwise.”
Among many enthusiastic accolades, another student stated: “Being a freshman and ignorant of many aspects of college life, I had trouble adjusting. It was always my dream to enter graduate school one day. However, I really had no clue what to do to get there. I sought the advice of my professors, but Dr. Snyder really helped me the most. He would spend time to get to know me, understand what type of person I am, help me to learn where my strengths and abilities are, and to help me to discover which aspect of chemistry I was most passionate about. In doing so, I personally felt that Professor Snyder went the extra mile to be a part of my academic journey. It is professors like Dr. Snyder that make Boston University such a great school.”
This news item has been adapted from the April 30, 2009, award announcement at the CAS Faculty Meeting. We thank the Associate Dean for Undergraduate Programs, Wayne Snyder, for sharing his citation.