Publications

2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 1992

2008

Kuhn H and Frank-Kamenetskii MD "Labeling of unique sequences in double-stranded DNA at sites of vicinal nicks generated by nicking endonucleases" Nucleic Acids Res. 36, e40 (2008). Print PDF Screen PDF
Irina V. Smolina IV, Kuhn H, Lee C, and Frank-Kamenetskii MD "Fluorescence-based detection of short DNA sequences under non-denaturing conditions" Bioorg. Med. Chem. 16, 84-93 (2008). PDF

2007

Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA, and Collins JJ "A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics" Cell 130, 797-810 (2007).
Deans TL, Cantor CR, and Collins JJ "A Tunable Genetic Switch Based on RNAi and Repressor Proteins for Regulating Gene Expression in Mammalian Cells" Cell 130, 363-372 (2007).
Murphy KF, Balázsi G, and Collins JJ "Combinatorial promoter design for engineering noisy gene expression" Proc. Natl. Acad. Sci. USA 104, 12726–12731 (2007). PDF
Lu TK, and Collins JJ "Dispersing biofilms with engineered enzymatic bacteriophage" Proc. Natl. Acad. Sci. USA 104, 11197–11202 (2007). PDF
Kuhn H "A nonisotopic assay for unambiguous assignment of DNA glycosylase functionality" Anal. Biochem. 366, 105-107 (2007). PDF
Valencia-Burton M, McCullough RM, Cantor CR, Broude NE "RNA visualization in live bacterial cells using fluorescent protein complementation" Nat. Methods 4, 421-427 (2007).
Aslan FM, Yu Y, Vajda S, Mohr SC, Cantor CR "Engineering a novel, stable dimeric streptavidin with lower isoelectric point" J. Biotechnol. 128, 213-225 (2007). PDF
Dwyer DJ, Kohanski MA, Hayete B, Collins JJ "Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli " Mol. Syst. Biol. 3, 91 (2007).
Smolina I, Lee C, and Frank-Kamenetskii M "Detection of Low-Copy-Number Genomic DNA Sequences in Individual Bacterial Cells by Using Peptide Nucleic Acid-Assisted Rolling-Circle Amplification and Fluorescence In Situ Hybridization" Appl. Envir. Microbiol. 73, 2324-2328 (2007). Abstract
Zhang L, Kasif S, and Cantor CR "Quantifying DNA–protein binding specificities by using oligonucleotide mass tags and mass spectroscopy" Proc. Natl. Acad. Sci. USA 104, 3061-3066 (2007). PDF
Panyutin, IG, Panyutin, IV, and Demidov VV "Targeting linear duplex DNA with mixed-base peptide nucleic acid oligomers facilitated by bisPNA openers" Anal. Biochem. 362, 145-147 (2007). PDF

2006

Blake WJ, Balazsi G, Kohanski MA, Isaacs FJ, Murphy KF, Kuang Y, Cantor CR, Walt DR, Collins JJ. "Phenotypic consequences of promoter-mediated transcriptional noise" Molecular Cell 24, 853-865 (2006). PDF
Demidov VV and Broude NE. "Profluorescent protein fragments for fast bimolecular fluorescence complementation in vitro" Nat. Prot. 1, 714 - 719 (2006). PDF
Krueger A, Protozanova E, and Frank-Kamenetskii MD. "Sequence-dependent base pair opening in DNA double helix" Biophys. J. 90, 3091-3099 (2006). PDF
Liang X, Kuhn H, and Frank-Kamenetskii MD. "Monitoring single-stranded DNA secondary structure formation by determining the topological state of DNA catenanes" Biophys. J. 90, 2877-2889 (2006). PDF
Moiseev L, Unlu MS, Swan AK, Goldberg BB, and Cantor CR. "DNA conformation on surfaces measured by fluorescence self-interference" Proc. Natl. Acad. Sci. USA 103, 2623-2628 (2006). PDF
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR, Elston TC, and Collins JJ. "A bottom-up approach to gene regulation" Nature 439, 856-860 (2006). PDF
Demidov VV, Dokholyan NV, Witte-Hoffmann C, Chalasani P, Yiu H-W, Ding F, Yu Y, Cantor CR, and Broude NE. "Fast complementation of split fluorescent protein triggered by DNA hybridization" Proc. Natl. Acad. Sci. USA 103, 2052-2056 (2006). PDF
Yakovchuk P, Protozanova E, and Frank-Kamenetskii MD. "Base-stacking and base-pairing contributions into thermal stability of the DNA double helix" Nucleic Acids Res. 34, 564-574 (2006). PDF

2005

Kuhn H and Frank-Kamenetskii MD. "Template-independent ligation of single-stranded DNA by T4 DNA ligase" FEBS J. 272, 5991-6000 (2005). PDF
Smolina IV, Cherny DI, Nietupski RM, Beals T, Smith JH, Lane DJ, Broude NE, and Demidov VV. "High-density fluorescently labeled rolling-circle amplicons for DNA diagnostics" Anal. Biochem. 347, 152-155 (2005). PDF
Smolina IV, Demidov VV, Soldatenkov VA, Chasovskikh SG, and Frank-Kamenetskii MD."End invasion of peptide nucleic acids (PNAs) with mixed-base composition into linear DNA duplexes" Nucleic Acids Res. 33, e146 (2005). PDF
McCullough RM, Cantor CR, and Ding C. "High-throughput alternative splicing quantification by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry" Nucleic Acids Res. 33, e99 (2005). PDF
Aslan FM, Yu Y, Mohr SC, and Cantor CR. "Engineered single-chain dimeric streptavidins with an unexpected strong preference for biotin-4-fluorescein" Proc. Natl. Acad. Sci. USA 102, 8507-8512 (2005). PDF
Du Q, Vologodskaia M, Kuhn H, Frank-Kamenetskii M, and Vologodskii A. "Gapped DNA and cyclization of short DNA fragments" Biophys. J. 88, 4137-4145 (2005). PDF
di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliott SJ, Schaus SE, Collins JJ. "Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks" Nat. Biotechnol. 23, 377-383 (2005). PDF
Yanai I, Yu Y, Zhu XH, Cantor CR, and Weng ZP. "An avidin-like domain that does not bind blotin is adopted for oligomerization by the extracellular mosaic protein fibropellin" Prot. Sci. 14, 417-423 (2005). PDF
Broude NE. "Molecular beacons and other hairpin probes" in Encyclopedia of Diagnostic Genomics and Proteomics, J. Fuchs and M. Podda (eds.), M. Dekker Press, pp.846-850 (2005). PDF
Demidov VV."10 years of rolling the minicircles: RCA assays in DNA diagnostics" Exp. Rev. Mol. Diag. 5, 477-478 (2003). PDF
Demidov VV. "Rolling-circle amplification (RCA)" in Encyclopedia of Diagnostic Genomics and Proteomics, J. Fuchs and M. Podda (eds.), M. Dekker Press, pp.1175-1179 (2005). PDF

2004

Kolotov, BA., Demidov, VV, and Volkov, SN. "Chlorophyll status as the indication of environment degradation upon the contamination with heavy metals" Geoekologiya 2, 20-25 (2004).
Zhang L, Kasif S, Cantor CR, and Broude NE. "GC/AT-content spikes as genomic punctuation marks" Proc. Natl. Acad. Sci. USA 101, 16855-16860 (2004). PDF
Gardner TS, Shimer S and Collins JJ. "Inferring microbial genetic networks" ASM News 70, 121-126 (2004). PDF
Liang X, Jensen K, and Frank-Kamenetskii MD. "Very Efficient Template/Primer-Independent DNA Synthesis by Thermophilic DNA Polymerase in the Presence of a Thermophilic Restriction Endonuclease" Biochemistry 43, 13459-13466 (2004). PDF
Smolina IV, Demidov VV, Cantor CR, Broude NE. "Real-Time Monitoring of Branched RCA Reaction with PNA Beacon" Anal. Biochem. 335, 326-329 (2004). PDF
Protozanova E, Yakovchuk P, Frank-Kamenetskii MD. "Stacked–Unstacked Equilibrium at the Nick Site of DNA" J. Mol. Biol. 342, 775-785 (2004). PDF
Blake WJ, Isaacs FJ. "Synthetic biology evolves" Trends in Biotech. 22, 321-324 (2004). PDF
Ding C, Chiu RWK, Lau TK, Leung TN, Chan LC, Chan AYY, Charoenkwan P, Ng ISL, Law HY, Ma ESK, Xu X, Wanapirak C, Sanguansermsri T, Liao C, Ai MATJ, Chui DHK, Cantor CR. "MS analysis of single-nucleotide differences in circulating nucleic acids: Application to noninvasive prenatal diagnosis" Proc. Natl. Acad. Sci. USA 101, 10762-10767 (2004). PDF
Isaacs FJ, Dwyer DJ, Ding C, Pervouchine DD, Cantor CR, Collins JJ. "Engineered riboregulators enable post-transcriptional control of gene expression" Nat. Biotechnol. 22, 841-847 (2004). PDF
He Y, Panyutin IG, Karavanov A, Demidov VV, Neumann RD. "Sequence-specific DNA strand cleavage by (111)In-labeled peptide nucleic acids" Eur J Nucl Med Mol Imaging 31, 837-845 (2004). PDF
Kobayashi H, Kærn M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. "Programmable cells: Interfacing natural and engineered gene networks" Proc. Natl. Acad. Sci. USA 101, 8414-8419 (2004). PDF
Kuhn H, Cherny DI, Demidov VV, and Frank-Kamenetskii, MD. "Inducing and modulating anisotropic DNA bends by pseudocomplementary peptide nucleic acids" Proc. Natl. Acad. Sci. USA 101, 7548-7553 (2004). PDF
Ding C, Maier E, Roscher AA, Braun A, and Cantor CR. "Simultaneous quantitative and allele-specific expression analysis with real competitive PCR". BMC Genetics 5, 8 (2004).
Demidov, VV. "Nanobiosensors and molecular diagnostics: promising partnership" Expert Rev. Mol. Diagn. 4, 267-268 (2004). PDF
Broude NE, van Heusden S, and Finkers R."High multiplexity PCR based on PCR suppression" in: DNA Amplification: Current Technologies and Applications, V.V. Demidov and N.E. Broude (eds), pp 61-76, Horizon Scientific Press, Wymondham, England (2004). PDF (Book contents) (Book reviews in Emerging Infectious Diseases, Exp. Rev. Mol. Diag., J. Antimicrobial Chemotherapy)
Kuhn H, and Demidov VV."Rolling-circle amplification of duplex DNA sequences assisted by PNA openers" in DNA Amplification: Current Technologies and Applications, V.V. Demidov and N.E. Broude (eds), pp 227-243, Horizon Scientific Press, Wymondham, England (2004). PDF (Book contents) (Book reviews in Emerging Infectious Diseases, Exp. Rev. Mol. Diag.)
Abibi A, Protozanova E, Demidov VV, and Frank-Kamenetskii MD. "Specific versus non-specific binding of cationic PNAs to duplex DNA" Biophys. J. 86, 3070-3078 (2004). PDF
Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, Cantor CR and Kasif S. "Whole genome annotation using evidence integration in functional linkage networks " Proc. Natl. Acad. Sci. USA 101, 2888-2893 (2004) PDF
Antonenko YN, Rokitskaya TI, Kotova EA, Reznik GO, Sano T, and Cantor CR. "Effect of streptavidins with varying biotin binding affinities on the properties of biotinylated gramicidin channels" Biochemistry 43, 4575-4582 (2004). PDF
Spira A, Beane J, Schembri F, Liu G, Gilman S, Yang X, Ding C, Cantor CR and Brody J. "A noninvasive method for obtaining buccal mucosal RNA for measuring patterns of gene expression in cells from the mouth", BioTechniques 36, 484-487 (2004).
Frank-Kamenetskii MD, and Demidov VV. "PNA directed genome rare cutting: new developments". In P.E. Nielsen (Ed.), Peptide Nucleic Acids: Protocols and Applications (Second Edition), P.E. Nielsen (Ed.), Horizon Bioscience, Wymondham, England (2004). PDF
Demidov VV. "PNA openers for duplex DNA: basic facts, fine tuning and emerging applications". In P.E. Nielsen (Ed.), Peptide Nucleic Acids: Protocols and Applications (Second Edition), P.E. Nielsen (Ed.), Horizon Bioscience, Wymondham, England (2004). PDF
Ding C and Cantor CR. "Quantitative analysis of nucleic acids--the last few years of progress" J Biochem Mol Biol. 2004 Jan 31;37(1):1-10.
Demidov VV and Frank-Kamenetskii MD. "Two sides of the coin: affinity and specificity of nucleic acid interactions" Trends in Biochemical Sciences 29, 62-71 (2004). PDF

2003

Kærn M, Blake WJ, and Collins JJ. "The engineering of gene regulatory networks" Annu. Rev. Biomed. Eng. 5, 179-206 (2003). PDF
Kolotov BA, Demidov VV, Volkov SN. "Chlorophyll content as a primary indicator of the environment degradation due to contamination with heavy metals" Dokl Biol Sci. 393, 550-552 (2003).
Reznik GO, Yu Y, Tarr GE, and Cantor CR. "Native disulfide bonds in plasma retinol-binding protein are not essential for all-trans-retinol-binding activity" J. Prot. Res. 2, 243-248 (2003). PDF
Broude NE, and Cantor CR. "Neurological diseases and RNA-directed gene regulation: prospects for new diagnostics and therapy" Exp. Rev. Mol. Diag. 3, 269-274 (2003). PDF
Isaacs FJ, Hasty J, Cantor CR, and Collins JJ. "Prediction and measurement of an autoregulatory genetic module" Proc. Natl. Acad. Sci. USA 100, 7714-7719 (2003). PDF
Smolina IV, and Demidov VV. "Sequence-universal recognition of duplex DNA by oligonucleotides via pseudocomplementarity and helix invasion" Chem. Biol. 10, 591-595 (2003). PDF
Kuhn H, Hu Y, Frank-Kamenetskii MD, and Demidov VV. "Artificial site-specific DNA-nicking system based on common restriction enzymes assisted by PNA openers" Biochemistry 42, 4985-4992 (2003). PDF
Blake WJ, Kærn M, Cantor CR, and Collins JJ. "Noise in eukaryotic gene experssion" Nature 422, 633-637 (2003). PDF
Demidov VV. "Tough nuts to crack: encouraging progress in peptide nucleic acid hybridization to structures DNA/RNA targets" Drug Discovery Today 8, 390 (2003). PDF
Ding C and Cantor CR. "Direct molecular haplotyping of long-range genomic DNA with M1-PCR " Proc. Natl. Acad. Sci. USA 100, 7449-7453 (2003). PDF
Protozanova E, Demidov VV, Nielsen PE, and Frank-Kamenetskii MD. " Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes" Nucleic Acids Res. 31, 3929-3935 (2003). PDF
Demidov VV. "Earrings and padlocks for the double helix: topological labeling of duplex DNA" Trends in Biotech. 4, 148-151 (2003). PDF
Demidov VV. "Golden jubilee of the DNA double helix" Trends in Biotech. 4, 139-140 (2003). PDF
Ding C and Cantor CR. "A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS " Proc. Natl. Acad. Sci. USA 100, 3059-3064 (2003). PDF
Demidov VV. "DNA diagnostics in the fifty-year retrospect" Exp. Rev. Mol. Diag. 3, 89-92 (2003). PDF
Smolina, IV, Demidov VV and Frank-Kamenetskii MD "Pausing of DNA polymerases on duplex DNA templates due to ligand binding in vitro" J. Mol. Biol. 326, 1113-1125 (2003). PDF
Demidov VV. "PNA and LNA throw light on DNA" Trends in Biotech. 21, 4-7 (2003). PDF

2002

Frank-Kamenetskii, MD "DNA Structure: Sequence Effects" Encyclopedia of Life Sciences. Macmillan Publishers Ltd, Nature Publishing Group / www.els.net PDF
Kuhn H, Demidov VV and Frank-Kamenetskii MD "Rolling-circle amplification under topological constraints" Nucleic Acids Res. 30, 574-580 (2002). PDF
Demidov, VV "PNA comes out of age: from infancy to maturity" Drug Discovery Today 7, 153-155 (2002). PDF
Kuhn H, Demidov VV, Coull JM, Fiandaca MJ, Gildea BD, and Frank-Kamenetskii MD "Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets" J. Am. Chem. Soc. 124, 1097-1103 (2002). PDF
Demidov VV, Protozanova E, Izvolsky KI, Price C, Nielsen PE, and Frank-Kamenetskii MD "Kinetics and mechanism of the DNA double helix invasion by pseudocomplementary PNAs" Proc. Natl. Acad. Sci. USA 99, 5953-5958 (2002). PDF
Broude NE (2002) "Stem-loop oligonucleotide probes: a robust tool for molecular biology and biotechnology" Trends in Biotech. 20, 249-256 (2002). PDF
Demidov VV and Frank-Kamenetskii, MD. (2002) "PNA openers and their applications" In P.E. Nielsen (ed), PNA: Methods and Protocols. Humana Press, 119-130 (2002).
Broude NE, "Trouble with differential display" Trends in Biotech.20, 481 (2002). PDF
Broude NE, "Differential display in the time of microarrays" Exp. Rev. Mol. Diag. 2, 209 (2002).
Demidov VV, "New kids on the block: emerging PNA-based DNA diagnostics" Exp. Rev. Mol. Diagn. 2, 89-91 (2002). PDF
Demidov VV,"On proteins, DNA and topology"Trends in Biotech. 20, 234 (2002). PDF
Wintzingerode F, Böcker S, Schlötelburg C, Chiu NHL, Storm N, Jurinke C, Cantor CR, Göbel UB, and van den Boom D, "Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification"Proc. Natl. Acad. Sci. USA 99, 7039-7044 (2002). PDF
Kuhn H, Protozanova E., and Demidov VV. "Monitoring of single nicks in duplex DNA by gel electrophoretic mobility-shift assay" Electrophoresis 23, 2384-2387 (2002). PDF
Protozanova E, Demidov VV, Soldatenkov V, Chasovskikh S, and Frank-Kamenetskii MD "Tailoring the activity of restriction endonuclease PleI by PNA-induced DNA looping" EMBO rep 3, 956-961 (2002). PDF
Demidov VV. "Rolling-circle amplification in DNA diagnostics: the power of simplicity" Exp. Rev. Mol. Diagn. 2, 542-548 (2002). PDF
Goel A, Ellenberger T, Frank-Kamenetskii MD, and Herschbach D "Unifying themes in DNA replication: reconciling single molecule kinetic studies with structural data on DNA polymerases" J. Biomol. Struct. Dyn. 19, 1-14 (2002). PDF .

2001

Broude NE, Zhang L, Woodward K, Englert D, and Cantor CR "Multiplex allele-specific target amplification based on PCR suppression" Proc Natl Acad Sci U S A 98, 206-11 (2001) PMID: 11136256 PDF
Buetow KH, Edmonson M, MacDonald R, Clifford R, Yip P, Kelley J, Little DP, Strausberg R, Koester H, Cantor CR, and Braun A "High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry" Proc Natl Acad Sci U S A 98, 581-584 (2001) PMID: 11136232 PDF
Demidov VV and Broude NE, Kuhn H, Lavrentieva-Smolina IV, and Frank-Kamenetskii MD "An artificial primosome: design, function and applications" ChemBioChem 2,133-139 (2001). PDF
Demidov VV, Frank-Kamenetskii MD "Sequence-Specific Targeting Duplex DNA by Peptide Nucleic Acids via Triplex Strand Invasion" Methods: A Companion to Methods in Enzymology 23,108-122 (2001). Abstract
Demidov VV, Kuhn H, Lavrentieva-Smolina IV, and Frank-Kamenetskii MD "PNA-Assisted Topological Labeling of Duplex DNA" Methods: A Companion to Methods in Enzymology 23, 123-131 (2001). PDF
Hasty J, Isaacs F, Dolnik M, McMillen D and Collins JJ "Designer gene networks: towards fundamental cellular control" CHAOS 11, 207-220 (2001).
Jurinke C, van den Boom D, Cantor CR, and Koster H "Automated genotyping using the DNA MassArray technology" Methods Mol Biol 170, 103-16 (2001) PMID: 11357675
Hasty J, McMillen D, Isaacs F and Collins JJ "Computational studies of gene regulatory networks: in numero molecular biology" Nature Reviews Genetics 2, 268-279 (2001). PDF
Goel A, Frank-Kamenetskii MD, Ellenberger T, and Herschbach D "Tuning DNA Strings : Modulating the Rate of DNA Replication with Mechanical Tension" Proc Natl Acad Sci U S A 98, 8485-8489 (2001). PDF
Kuhn H, Frank-Kamenetskii MD, and Demidov VV "High-purity preparation of a large DNA dumbbell" Antisense & Nucleic Acid Drug Development 11, 149-153 (2001). PDF
Hasty J and Collins JJ "Protein interactions: unspinning the web" Nature 411, 30-31 (2001). PDF
Kuhn H, Demidov VV, Gildea BD, Fiandaca MJ, Coull JC, and Frank-Kamenetskii MD "PNA Beacons for Duplex DNA" Antisense & Nucleic Acid Drug Dev. 11, 265-270 (2001). PDF
Frank-Kamenetskii, MD "Why DNA?" In: Frontiers of Life, Volume I: The Origins of Life, eds: D. Baltimore et al., Academic Press, 277-291 (2001).
Demidov VV "PD-loop technology: PNA openers at work" Exp. Rev. Mol. Diagn. 1, 343-351 (2001). PDF
Reznik GO, Vajda S, Cantor CR, and Sano T "A streptavidin mutant useful for directed immobilization on solid surfaces" Bioconj. Chem. 12, 1000-1004 (2001). Abstract
Broude NE, Driscoll K, and Cantor CR (2001) "High-level multiplex PCR" Antisense & Nucleic Acid Drug Dev. 11, 327-332 (2001). Abstract
Broude NE, Woodward K, Cavallo R, Cantor CR, and Englert D "DNA microarrays with stem-loop DNA probes: preparation and applications" Nucleic Acids Res. 29, e92 (2001). PDF
Demidov VV (2001) "DNA dumbbells: decoys for gene-regulatory proteins" Drug Discov. Today 6, 749-750 (2001). PDF

2000

Cantor CR "Biotechnology in the 21st century" Trends Biotechnol 18, 6-7 (2000) PMID: 10631771 Abstract
Chiu NH, Tang K, Yip P, Braun A, Koster H, and Cantor CR "Mass spectrometry of single-stranded restriction fragments captured by an undigested complementary sequence" Nucleic Acids Res 28, e31 (2000) PMID: 10734208 PDF
Demidov VV, Bukanov NO, and Frank-Kamenetskii MD "Duplex DNA capture" Curr Issues Mol Biol 2, 31-35 (2000).
Gardner TS, Cantor CR, and Collins JJ "Construction of a genetic toggle switch in Escherichia coli" Nature 403, 339-42 (2000) PMID: 10659857 Abstract
Izvolsky KI, Demidov VV, Nielsen PE, and Frank-Kamenetskii MD "Sequence-specific protection of duplex DNA against restriction and methylation enzymes by pseudocomplementary PNAs" Biochemistry 39, 10908-13 (2000) PMID: 10978178 PDF
Hasty J, Pradines J, Dolnik M and Collins JJ "Noise-based switches and amplifiers for gene expression" Proc Natl Acad Sci U S A 97, 2075-2080 (2000). Abstract
Kuhn H, Demidov VV, and Frank-Kamenetskii MD "An Earring for the Double Helix: Assembly of Topological Links Comprising Duplex DNA and a Circular Oligonucleotide" J Biomol Struct Dyn 11, 221-225 (2000). PDF
Sabanayagam CR, Smith CL, and Cantor CR "Oligonucleotide immobilization on micropatterned streptavidin surfaces" Nucleic Acids Res 28, e33 (2000) PMID: 10734210 PDF
Gardner TS and Collins JJ "Neutralizing noise in gene networks" Nature 405, 520-521 (2000). PDF
Sano T, and Cantor CR "Streptavidin-containing chimeric proteins: design and production." Methods Enzymol 326,:305-11(2000) PMID: 11036649
Shin I, Kim J, Cantor CR, and Kang C "Effects of saturation mutagenesis of the phage SP6 promoter on transcription activity, presented by activity logos" Proc Natl Acad Sci U S A 97,# 3890-5 (2000) PMID: 11036649 Abstract

1999

Broude NE, Demidov VV, Kuhn H, Gorenstein J, Pulyaeva H, Volkovitsky P, Drukier AK, and Frank-Kamenetskii MD "PNA openers as a tool for direct quantification of specific targets in duplex DNA" J Biomol Struct Dyn 17, 237-244 (1999). Abstract
Broude NE, Storm N, Malpel S, Graber JH, Lukyanov S, Sverdlov E, and Smith CL "PCR based targeted genomic and cDNA differential display." Genet. Anal. 15, 51-63 (1999). Abstract
Demidov VV and Frank-Kamenetskii MD "PNA directed genome rare cutting." In P.E. Nielsen and M. Egholm (eds), PNA: Protocols and Applications. pp. 175-186 Horizon Scientific Press, Wymondham, UK (1999).
Demidov VV, Bukanov NO and Frank-Kamenetskii MD "Duplex DNA capture." In P.E. Nielsen and M. Egholm (eds), PNA: Protocols and Applications. pp. 187-195. Horizon Scientific Press, Wymondham, UK (1999).
Frank-Kamenetskii MD "Triplexes and Biotechnology", in Triple Helix Forming Oligonucleotides (eds. C. Malvy and A. Harel-Bellan), pp. 285-294, Kluwer Academic Publishers, Boston (1999).
Graber JH, Cantor CR, Mohr SC, and Smith TF "Genomic detection of new yeast pre-mRNA 3'-end-processing signals." Nucleic Acids Res. 27, 888-894 (1999). PDF
Graber JH, Smith CL, and Cantor CR "Differential sequencing with mass spectrometry", Genet. Anal. 14, 215-9 (1999). Abstract
Hatch A, Sano T, Misasi J, and Smith CL "Rolling circle amplification of DNA immobilized on solid surfaces and its application to multiplex mutation detection." Genet. Anal. 15, 35-40 (1999). Abstract
Kuhn H, Demidov VV, Nielsen PE and Frank-Kamenetskii MD "An Experimental Study of Mechanism and Specificity of Peptide Nucleic Acid (PNA) binding to Duplex DNA." J. Mol. Biol. 286, 1337-1345 (1999). PDF
Kuhn H, Demidov VV, and Frank-Kamenetskii MD "Topological links between duplex DNA and a circular DNA single strand. Angewandte Chemie Int. Ed. 38, 1446-1449 (1999). PDF
Lavrentieva I, Broude NE, Lebedev Y, Gottesman II, Lukyanov SA, Smith CL, and Sverdlov ED "High polymorphism level of genomic sequences flanking insertion sites of human endogenous retroviral long terminal repeats." FEBS Lett. 443, 341-7 (1999). Abstract
Shchepinov MS, Mir KU, Elder JK, Frank-Kamenetskii MD, and Southern EM "Oligonucleotide dendrimers: stable nano-structures" Nucleic Acids Res 27, 3035-3041 (1999) Abstract
Surdi GA, Yaar R, and Smith CL "Discrimination of DNA duplexes with matched and mismatched tandem repeats by T4 endonuclease VII." Genet. Anal. 14, 177-9 (1999). Abstract

1998

Bukanov NO, Demidov VV, Nielsen PE, and Frank-Kamenetskii MD "PD-Loop: A Complex of Duplex DNA with an Oligonucleotide." Proc. Natl. Acad. Sci. USA 95, 5516-5520 (1998). PDF
Cantor CR, and Little DP "Massive attack on high-throughput biology." Nat Genet 20, 5-6 (1998). PDF
Cantor CR "How will the Human Genome Project improve our quality of life?" Nat Biotechnol 16, 212-213 (1998).
Frank-Kamenetskii MD "Perché il DNA? (Why DNA?)" Frontiere della Biologia, Enciclopedia Italiana (1998) (in Italian).
Fu DJ, Tang K, Braun A, Reuter D, Darnhofer-Demar B, Little DP, O'Donnell MJ, Cantor CR, and Koster H "Sequencing exons 5 to 8 of the p53 gene by MALDI-TOF mass spectrometry." Nat Biotechnol 16, 381-4 (1998). Abstract
Graber JH, O'Donnell MJ, Smith CL, and Cantor CR "Advances in DNA Diagnostics." Curr Opin Biotechnol 9, 14-18 (1998). Abstract
Izvolsky KI, Demidov VV, Bukanov NO and Frank-Kamenetskii MD "Yeast artificial chromosome segregation from host chromosomes with similar lengths." Nucleic Acids Res. 26, 5011-5012 (1998). PDF
Kong H, and Smith CL "Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage?" Biol Chem 379, 605-9 (1998). Abstract
Kuhn H, Demidov VV, Frank-Kamenetskii MD, and Nielsen, PE "Kinetic Sequence Discrimination of Cationic bis-PNAs upon Targeting of Double-Stranded DNA." Nucleic Acids Res. 26, 582-587 (1998). PDF
Lomakin A, and Frank-Kamenetskii MD "A Theoretical Analysis of Specificity of Nucleic Acid Interactions with Oligonucleotides and Peptide Nucleic Acids (PNAs)." J. Mol. Biol. 276, 57-70 (1998). PDF
Oliveira RP, Broude NE, Macedo AM, Cantor CR, Smith CL, and Pena SD "Probing the genetic population structure of Trypanosoma cruzi with polymorphic microsatellites." Proc Natl Acad Sci U S A 95, 3776-80 (1998). PDF
Reznik GO, Vajda S, Sano T, and Cantor CR "A streptavidin mutant with altered ligand-binding specificity." Proc Natl Acad Sci U S A 95, 13525-30 (1998). PDF
Sano T, Vajda S, and Cantor CR "Genetic engineering of streptavidin, a versatile affinity tag." J Chromatogr B Biomed Sci Appl 715, 85-91 (1998). Abstract

1997

Broude NE, Chandra A, and Smith CL "Differential Display of Genome Subsets Containing Specific Interspersed Repeats." Proc Natl Acad Sci U S A 94:4548-53 (1997).
Cantor CR, Sano T, Broude NE, and Smith CL "Instrumentation in molecular biomedical diagnostics: an overview." Genet Anal 14, 31-6 (1997).
Demidov VV, Yavnilovich MV, and Frank-Kamenetskii M.D. "Kinetic analysis of specificity of duplex DNA targeting by homopyrimidine PNAs." Biophys. J. 72, 2763-2769 (1997).
Frank-Kamenetskii MD "Unraveling DNA. The Most Important Molecule of Life", Addison-Wesley, Reading (1997).
Frank-Kamenetskii MD "Biophysics of the DNA molecule." Phys. Reports 288, 13-60 (1997). PDF
Fu D., Koster H, Smith CL, and Cantor CR "Sequencing double-stranded DNA by strand displacement." Nucleic Acids Res 25, 677-9 (1997).
Gonzalez M, Bagatolli LA, Echabe I, Arrondo JLR, Argarana CE, Cantor CR, and Fidelio GD "Interaction of biotin with streptavidin. Thermostability and conformational changes upon binding." J Biol Chem 272, 11288-94 (1997).
Sano T, Vajda S, Smith CL, and Cantor CR "Engineering subunit association of multisubunit proteins: a dimeric streptavidin." Proc Natl Acad Sci U S A 94, 6153-8 (1997).
Sano T, Smith CL, and Cantor CR "Deoxyribonucleic acids as unique markers in molecular detection." Genet Anal 14,37-40 (1997).
Sano T, Smith CL, and Cantor CR "Expression and purification of recombinant streptavidin-containing chimeric proteins." Methods Mol Biol 63,119-28 (1997).
Smith CL, Oliva R, Lawrence SK, and Wang D "Chromosomes, Molecular Studies." Encyclopedia of Human Biology, 2nd Edition. R. Dulbecco (ed). San Diego:Academic Press (1997).
Szafranski P, Smith CL, and Cantor CR "Principal transcription sigma factors of Pseudomonas putida strains mt-2 and G1 are significantly different." Gene 204,133-8 (1997).
Szafranski P, Smith CL, and Cantor CR "Cloning and analysis of the dnaG gene encoding Pseudomonas putida DNA primase." Biochim Biophys Acta 1352, 243-8 (1997).
Szafranski P, Mello CM, Sano T, Smith CL, Kaplan DL, and Cantor CR "A new approach for containment of microorganisms: dual control of streptavidin expression by antisense RNA and the T7 transcription system." Proc Natl Acad Sci U S A 94,1059-63 (1997).

1996

Bukanov N,Wang D, and Smith CL "Physical Maps of Human Chromosomes." Encyclopedia of Molecular Biology and Molecular Medicine, R. A. Meyers (ed.) New York: VCH. 4:215-221. (1996).
Cantor CR, Szafranski P, Sano T, Mello CM, Smith CL, and Kaplan DL. "Streptavidin-based conditional lethal system for biological containment of Pseudomonas putida." Proceedings of the 3rd International Symposium of the International Society for Environmental Biotechnology. (1996).
Cantor CR, Broude N, Sano T, Przetakiewicz M, Smith CL "The Future of DNA Sequencing: Methods and Applications." Mass Spectrometry in the Biological Sciences, A. L. Burlingame and S. A. Carr (eds.) 519-533 (1996).
Cantor CR "Lighting Up Hybridization." Nature Biotech. 14: 264 (1996).
Demidov VV, Frank-Kamenetskii MD, and Nielsen PE "Complexes of duplex DNA with homopyrimidine peptidenucleic acid (PNA): new principle of biomolecular recognition." Biomolecular Structure and Dynamics, RH Sarma, MH Sarma, (eds). 2:129-134 (1996).
Frank-Kamenetskii MD "Le fil de la vie." Flammarion, France. 253 (in French) (1996).
Frederic T, Rosenfeld R, Cantor CR, and DeLisi C "RNA Loop Structure Prediction via Bond Scaling and Relaxation." Biopolymers 38: 769-779 (1996).
Fu DJ, Broude NE, Koster H, SmithCL, and Cantor CR"Efficient Preparation of Short DNA Sequence Ladders Potentially Suitable forMALDI-TOF Sequencing." Genetic Analysis (Biomolecular Engineering). 12:137-142 (1996).
Hnatowich DJ, Mardirossian G, Fogarasi M, Sano T, Smith CL, Cantor CR, Ruschkowski M, and Winnard P Jr. "Comparataive Properties of Technetium-99M-Labeled Single Stranded Natural DNA and a Phosphorothioate JDerivative in vitro and in Mice." J. Pharmacology and Exper. Therapeutics 276: 326-334 (1996).
Karapetian AT, Mehrabian NM, Terzikian GA, Vardevanian PO, Antonian AP, Borisova OF, and Framk-Kamenetskii MD "Theoretical treatment of melting of complexes of DNA with ligands having several types of binding sites on helical and single-stranded DNA." J. Biomol. Struct. Dyn. 14:275-283 (1996).
Koste H, Tang K, Fu DJ, Braun A, Van den Bloom D, Smith CL, Cotter RJ, and Cantor CR "A strategy for rapid and efficient DNA sequencing by mass spectrometry." Nature Biotech 14: 1123-1128 (1996).
Lagutina IV, Yurkova EV, Azhikina TL, Demin VV, Smith CL, and Sverdlov ED "Determination of the patterns of hexanucleotide distribution along the DNA by electron miscroscopy." Genetic Analysis (Biomolecular Engineering) 13: 9-14 (1996).
O'Donnell-Maloney MJ, Smith CL, and Cantor CR 1996. "The development of microfabricated arrays for DNA sequencing and analysis." Tibtech 14: 401-407 (1996).
Reznik GO, Vajda S, Smith CL, Cantor CR, and Sano T"Streptavidins with Intersubunit Crosslinks: Introduction of Covalent Bonds Between Subunit through the Dimer-dimer Interface Enhances the Overall Stability of Streptavidin." Nature Biotechnology, 14: 1007-1011 (1996).
Sano T, Vajda S, Reznik GO, Smith CL, and Cantor CR "Molecular Engineering of Streptavidins." Annals of NY Acad. of Sci., 799:383-390 (1996).
Sano T, Reznik GO, Szafranski P, Niemeyer CM, Vajda S, Smith CL, Mello CM, Kaplan DL, Rusckowski M, Hnatowich DJ, and Cantor CR"Steptavidin: a genetically engineered biological lock and key." In Proceedings of the 50th Annivversary Conference of the Korean Chemical Society, Korean Chemical Society, Seoul, Korea. 359-363 (1996).
Sano T, Smith CL, and Cantor CR"Deoxyribonucleic acids as unique markers in molecular dectection." Genetic Analysis 2:37-40 (1996).
Sano T, Smith CL, and Cantor CR "Immuno-PCR. In, The Encyclopedia of Molecular Biology and Biotechnology" Meyers, R.A. (ed). 4: 288-295 (1996).
Smith CL "The Future of DNA" Antor CR, Broude N, Sano T, Przetakiewicz M Sequencing: Methods and Applications." A. L. Burlingame and S. A. Carr (eds), Mass Spectrometry in the Biological Sciences. Humana, Totowa, NJ. 519-533 (1996).
Smith CL, Wang D, Broude N, Bukanov N, Monastryskaya G, and Sverdlov E "Parallel Processing in Genome Mapping and Sequencing." M. Schwab (ed), Methods: A Companion to Methods in Enzymology. 9: 136-144 (1996).
Smith CL, and Cantor CR 1996. "Consequences of Mapping and Sequencing the Human Genome for Neurologic Diseases." In The Molecular and Genetic Basis of Neurological Disease, 2nd Edition. Rosenberg RN, Prusiner SB, DiMauro S, and Barchi RL(eds). Newton:Butternworth Heinemann (1996).
Veselkov AG, Demidov VV, Frank-Kamenetskii MD, and Nielsen PE "PNA as a rare genome-cutter." Nature 379:214 (1996)
Veselkov AG, Demidov VV, Nielsen PE, and Frank-Kamenetskii MD "A new class of genome rare cutters." Nucleic Acids Res. 24:2483-2488 (1996).
Yaar R, Szafranski P, Cantor CR and Smith CL "In situ Detection of Tandem Repeat Length" Genetic Analysis (Biomolecular Engineering) 13: 113-118 (1996).

1995

Anton J, Amils R, Smith CL and Lopez-Garcia P. "Comparativerestriction maps of the archeal megaplasmid PHM300 in different Haloferzmediterranei strains." System. Appl. Microbiology (1995).
Cantor CR, Broude N, Sano T, Przetakiewicz M, and Smith CL "The Future of DNA Sequencing: Methods and Applications." The Second International Congress on Mass Spectroscopy. (1995).
Cantor CR, Sano T and Smith CL "Implications of Large Scale DNA Analysis for the Development and Application of Biomarkers." M. L. Mendelsohn, J. P.Peeters, M. J. Normandy (eds.) Biomarkers and Occupational Health: Progress and Perspectives . Washington: John Henry Press 257-263 (1995).
Demidov VV, Yavnilovich MV, Belotserkovskii BP, Frank-Kamenetskii MD, and Nielsen PE "Kinetics and mechanism of peptide nucleic acid binding to duplex DNA." Proc. Natl.Acad.Sci. USA 92:2637-2641 (1995).
Fan JB, Cantor CR and Smith CL "Frequent Rearrangments Near the Ends of Shizosaccharomycs pombe Chromosome III." InterJournal (www //:dynamics.bu.edu) (1995).
Fan JB, and Smith CL "Structure of Schizosaccharomyces pombe Chromosomes: Mapping and Sequencing Endonuclease Hypersenstive Sites." Genetic Analysis (Biomolecular Engineering) (1995).
Frank-Kamenetskii MD 1995 "DNA topology" Theochem (J. Mol. Struct.) 336:235-243 (1995).
Frank-Kamenetskii MD "Nucleic Acids" Encyclopedia of Applied Physics, VCH Publishers, 12:19-45 (1995). PDF
Frank-Kamenetskii MD, and Mirkin SM "Triplex DNA structures" Ann. Rev. Biochem. 64:65-95 (1995). PDF
Klenin KV, Frank-Kamenetskii MD, and Langowski J "Modulation of intramolecular interactions in superhelical DNA by curved sequences. A Monte-Carlo simulation study" Biophys. J. 68:81-88 (1995).
Niemeyer CM, Sano T, Smith CL, and Cantor CR "Oligonucleotide-Directed Self-assembly of Proteins: SemisyntheticDNA-Streptavidin Hybrid Moleucles as Connectors for the Generation of Macroscopic Arrays and the Construction of Supramolecular Bioconjugates." Nucleic Acids Research 25: 5530-5539 (1995).
Sano T, Smith CL, and Cantor CR "Detecting Minute Amounts of Antigen." Chemtech 25:16-23 (1995).
Sano, T., C. L. Smith and C. R. Cantor. "Immuno-PCR(Immuno-polymerase chain reaction)." R. A. Meyers (ed), Molecular Biologyand Biotechnology: A Comprehensive Desk Reference. New York: VSH
Sano T, Smith CL, and Cantor CR "Very Sensitive AntigenDetection by Immuno-PCR." Immunoanalysis of Agrochemical: EmergingTechnologies. Washington:ACS. 175-185 (1995).
Sano T, Smith CL, and Cantor CR. "Detecting minute amountsof antigen." Chemtech 25: 24-30 (1995).
Sano T, and Cantor CR "Intersubunit contacts made bytryptophan 120 with biotin are essential for both strong biotin binding andbiotin-induced tighter subunit association of streptavidin." Proc.Nat.Acad.Sci. USA 92: 3180-3184 (1995).
Sano T, Reznik GO, Szafranski P, Rai A, Niemeyer CM, Vajda S, Smith CL, Mello CM, Kaplan DL, Rusckowski M, Hnatowich DJ, and Cantor CR "Applications of Streptavidin and Its Genetically Engineered Variants." Proceedings of the International Conference on Molecular Structural Biology (1995).
Smith CL, Kricka L, and Krull U "Development of Sensors forEnvironmental Microbes." Genetic Analysis (Biomolecular Engineering) 12:33-38 (1995).
Smith CL, Wang D, and Grothues D "Construction of Physical Mapsof Chromosomes." R. A. Meyers (ed), Molecular Biology and Biotechnology: A Comprehensive Desk Reference. New York: VSH Publishers, 420-423 (1995).
Tang K, Fu DJ, Cotter RJ, Cantor CR, and Köster H "Matrix-assisted laser desorption/ioniation mass spectrometry of immobilizedduplex DNA probes." Nuc. Acids. Res. 23: 3126-3131 (1995).
Virzi F, Winnard VF Jr., Fogarasi M, Sano T, Smith CL, Cantor CR, Rusckowski M, and Hnatowich DJ "Recombinant Metallothionein-Streptavidin Labeled with ¹⁸⁸ Re and^99mTc". Bioconjugate Chem. 6: 139 -144 (1995).
Wang D, Zhu Y, and Smith CL "A Set of Inter-Alu PCR Markers for Chromosome 21 Generated from Pulsed Field Gel Fractionated NotI Restriction Fragments." Genomics 26:318- 344 (1995).
Winnard VF, Fogarasi M Jr., Sano T, Smith CL, Cantor CR, Rusckowski M, and Hnatowich DJ "Recombinant metallothionein StreptavidinChimeras labeled with ¹⁸⁸Re and ^99mTc." BioconjugateChemistry 6: 139-144 (1995).

1994

Anton J, Lopez-Garxia P, Abad JP, Smith CL, and Amils R. "Alignment of Genes and Swa I Restriction Sistes to the BamH IGenomic Map of Haloferax mediterranei." FEMS Microbiology Letters 117:53-60 (1994).
Borovik AS, Grosberg AY, and Frank-Kamenetskii MD "Fractality of DNA texts" J. Biomol. Struct. Dyn. 12, 655-669 (1994).
Broude N, Sano T, Smith CL, and Cantor CR "Enhanced DNASequencing by Hybridizatioin." Proc. Nat. Acad. Sci., 91: 3072-3076 (1994).
Cantor CR, Grothues D, Sano T, Broude N, and Smith CL "Implications of Large Scale DNA Analysis for the Study of Microorganisms." Proceedings of the International Symposium on Microorganism DNA Analysis,1-6 (1994).
Cantor CR "Can computational science keep up with evolvingtechnology for genome mapping and sequencing?" Computational Methods in GenomeResearch,.Suhai, S. (ed) (1994).
Cherny DI, Kurakin AV, Lyamichev VI, Frank-Kamenetskii MD, Zinkevich VE, Firman K, and Nielsen, P.E. "Electron microscopic studies of sequence-specific recognition of duplex DNA by different ligands" J. Mol. Recognition 7:171-176 (1994).
Demidov VV, Buchardt O, and Nielsen PE 1994. "Stability of PNA (peptide nucleic acid) in serum and cellular extracts" Biochem. Pharmacology 48:1310-1313 (1994).
Demidov VV, Cherny DI, Kurakin AV, Yavnilovich MV, Malkov VA, Frank-Kamenetskii MD, Sönnichsen SH, and Nielsen PE "Electron microscope mapping of oligopurine tracts in duplex DNA by peptide nucleic acid targeting." Nucl. Acids Res., 22:5218-5222 (1994).
Grothues D, Cantor CR, and Smith CL "Top-down Construction ofan Ordered Schizosaccharomyces pombe Cosmid Library." Proc. Nat. Acad.Sci . 91: 4461-4465 (1994).
Grothues D, Cantor CR, and Smith, CL "Top-Down Construction of an Ordered Schizosaccharomyces pombe Cosmid Library." Proc. Nat. Acad. Sci USA.91: 4461-4465 (1994).
Mirkin SM, Frank-Kamenetskii MD "H-DNA and Related Structures" Ann. Rev. Biophys. Biomol. Struct. 23:541-576 (1994).
Niemeyer CM, Sano T, Smith CL, and Cantor CR "Oligonucleotide-directed self-assembly of proteins: semisynthetic DNA -streptavidin hybrid molecules as connectors for the generation of macroscopicarrays and the construction of supramolecular bioconjugates." Nuc.Acid.Res.22: 5530-5539 (1994).
Sano T, Pandori MW, Smith CL, and Cantor CR "Tighter Subunit Association of Streptavidin upon Biotin Binding." Advances inBiomagnetic Separation, Uhlen M, Hornes E, and Olsvik Ø (eds). Natick MA: EatonPublishing. 21-29 (1994).
Smith CL, Keith T, Hansmann I, Weissenbach J, Asimakopoulos FA, Bowden DW, Deleuze JF, Dutton ER, Fasman KH, Green T, Hadchouel M, Hazan J, Hilgartner S, Kingsbury DK, Loder B, Malafosse A, Meunier-Rotival M, Pearson PL, Siracusa LD, Steinlein O, White N, and Williamson CM "Report of The First International Workshop on HumanChromosome 20 Mapping." Cytogenet. Cell. Genet. 66: 77-82 (1994).
Smith CL "Review of 'Strategies for Physical Mapping'" Genome Analysis, K. E. Davies, S. M. Tilghman (eds.) QuarterlyReview of Biology 4: 69: 398 (1994).
Smith CL, Grothues D, Ito T, Sano T, Wang D, Zhu YW, and Cantor CR "Accelerating the rate of genome mapping and sequencing: will computational biology keep up?" Second International Conference onBioinformatics Supercomputing and Complex Genome Analysis, Lim HA, Fickett JW, Cantor CR, and Robbins RJ (eds).Singapore:World Scientific. 3-15 (1994).
Wang D, and Smith CL "Large Scale Structure Conservation Along the Entire Long Arm of Human Chromosome 21." Genomics 20: 441-451 (1994).
Yoshida K, Smith CL, and Overbeek R "A Primer on Rapid Prototyping of Genomic Databases in Prolog. Biocomputing: Informatics andGenome Projects. D. Smith (ed), Sand Diego: Academic Press, 233-248 (1994).

1993

Cherny DI, Malkov VA, Volodin, AA, and Frank-Kamenetskii MD "Electron Microscopy Visualization of Oligonucleotide Binding to Duplex DNA via Triplex Formation" J. Mol. Biol. 230, 379-383 (1993). PDF
Cantor CR, Grothues D, Sano T, Broude N, and Smith CL "Implications of Large Scale DNA Analysis f or the Study of Microorganisms." Annals of the Japanese Biotechnology Association, 1-6 (1993).
Cantor CR "A brief sketch of the Human Genome Project and it simplications for pharmaceutical technology." Pharmaceutical Technology.17:22-26 (1993).
Chuck RS, Cantor CR, and Tse DT "CD4-TCR associationfollowing CD4 engagement on CD4-T cell receptor complexes." Cellular Immunol.152: 211-219 (1993).
Crow T J, Poulter M, Lofthouse R, Chen G, Shah T, Bass N, Morganti C, Vita A, Smith CL, Boccio-Smith AB, Shields G, Morganti C, and DeLisi LE "Male Siblings with Schizophrenia Share Alleles at the Androgen Receptor above Chance Expectations." Am. J. Med. Genetics(Neuropsychiatric Genetics) 48: 159-160 (1993).
Gingrich JC, Lowry S, Kuo WL, Grey J, Smith CL, and Cantor CR "Cloning and characterization of Eag I YACS from HumanChromosome 21." Genomics 15: 228-240 (1993).
Gingrich JC, Lowry S, Kuo WL, Gray J, Smith CL, and Cantor CR "Cloning and characterization of Eag I YACs from human chromosome 21." Genomics. 15: 228-230 (1993).
Grothues D, Smith CL, and Cantor CR "PCR Amplification ofMegabase DNA with Tagged Random Primers (T-PCR)." Nucleic Acids Research 21:1321-1322 (1993).
Ito T, Smith CL, and Cantor CR "Affinity captureelectrophoresis for seq uence-specific DNA purification." Genet. Anal. Techniques& App. 9: 96-99 (1993).
Murray MN, Hansma HG, Bezanilla M, Sano T, Ogletree DF, Kolbe W, Smith CL, Cantor CR, Spengler S, Hansma PK, and Salmeron M "Atomic Force Microscopy of Biochemically Tagged DNA." Proc. Nat. Acad.Sci. 90: 3811-3814 (1993).
Pearson PL, Davies K, Cantor CR, and Loder B "General report of the CCM 92 meeting in Baltimore." Cuticchia AJ, Pearson PL, and Klinger HP( eds). Genome PriorityReports 1, Basel, Karger, 1-3 (1993)..
Ruzicka V, Marz W, Russ A, Gross W, Sano T, Smith CL, and Cantor CR "Immuno-PCR using a Commercially available Avidin." Science 260:688-689 (1993).
Sano T, Smith CL, and Cantor CR "A Streptavidin Mutantcontaining a Cysteine Stretch that Facilitates Production of a Variety ofSpecific Streptavidin Conjugates." Bio/Technology 11:201-206 (1993).
Smith CL, Grothues D, Ito T, Sano T, Wang D, Zhu YW, and Cantor CR "Accelerating the Rate of Genome Mapping and Sequencing: Will computational Biology Keep Up? Lim HA, Fickett JW, Cantor CR, and Robbins RJ (eds). The SecondInternational Conference on Bioinformatics, Supercomputing and Complex GenomeAnalysis. 3-15 (1993).
Smith CL, Oliva R, Wang D, Grothues D, and Lawrance S "Physical Strategies for the Molecular Dissection of Genomes" Genome Analysis of Protozoan Parasites, Nairobi, Kenya: IlRAD. 2-16 (1993).
Smith CL, Klco S, Zhang TY, Fang H, Oliva R, Fan JB, Bremer M, and Lawrance S "Analysis of Megabase DNA using Pulsed Field GelElectrophoresis." Methods in Molecular Genetics, Adolph KW (ed.) San Diego:Academic Press. 155-196 (1993).
Zhang TY, Fan JB, Ringquist S, Cantor CR, and Smith CL "The 0.7 to 3.3 Megabase Chromosomes from Candida, Kluvermyces, and Pichia Provide Accurate Size Standards for Pulsed Field Gel Electrophoresis." Electrophoresis 14: 290-295.
Zhu Y, Cantor CR, and Smith CL "DNA Sequence Analysis of Chromosome 21 Not I linking clones." Genomics 18: 199-205 (1993).

1992

Baehr A, Dunham G, Ginsburg A, Hagstrom R, Joerg D, Kazic T, Matsuda H, Michaels G, Overbeek R, Rudd K, Smith CL, Taylor R, Yoshida K, and Zawada D "An Integrated Database to Support Research onEscherchia coli." Technical Report, Mathematics and Computer ScienceDivision (UC402), Argonne National Laboratory , Argonne, Ill. ANL-1/92. 1-59 (1992).
Bremer M, Gimbel F, Thorner J, and Smith CL "VDEEndonuclease Cleaves the Saccharomyces cerevisiae Genomic DNA at aSingle Site: Physical Mapping of the VMA1 Gene." Nucleic Acids Research. 20:5484 (1992).
Cantor CR, Mirzabekov A, and Southern E "Report on the Sequencing by Hybridization Workshop." Genomics. 13: 1378-1383 (1992).
Cantor CR "The Challenges to Technology and informatics." The Code of Codes: Scientific and Social Issues in the Human Genome Project Kevles DJ, and Hood L (eds). Cambridge, MA: Harvard University Press 98 (1992).
Cantor, C. R. and C. L. Smith. "Implicatons of the Human GenomeProject for Clinical Neurosurgery". The Molecular and Genetic Basis of Neurological Disease, Rosenberg R, Prusiner SB, DiMauro S, Bachiand R, Kunkel L (eds). Stoneham MA: Butterworth Publishers 19-34 (1992).
Cantor CR "Budgeting the Genome." Trends in Biotechnology 10:6-7 (1992).
Cantor CR and Fields CA "Meeting Report: Genome SequencingConference III: Evolution and Progress." Genomics. 12: 419-420 (1992).
Doggett NA, Smith CL, and Cantor CR "The Effect of DNA Concentration on Mobility in Pulsed-Field Gel Electrophoresis." Nucleic Acids Res. 89: 85 9-864 (1992).
Fan JB, Rochet M, Gaillardin C, and CL Smith "Detection andCharacterization of a Ring Chromosome II in the Fission yeastSchizosaccharomyces pombe." Nucleic Acid Research. 20: 5943-5945 (1992).
Ichikawa H, Simizu K, Saito A, Wang D, Kobayashi H, Kaneko Y, Miyoshi H, Smith CL, Cantor CR, and Ohki M "Long-distanceRestriction Mapping of the Proximal Long Arm of Human Chromosome 21 with Not I Linking Clones." Proc. Nat. Acad. Sci USA. 89: 23-27 (1992).
Ito T, Smith CL, and Cantor CR "Triplex affinity capture of asingle copy clone from a yeast genomic library." Nuc. Acids. Res. 20: 3524 (1992).
Ito T, Smith CL, and Cantor CR "Affinity Capture Electrophoresis for Sequence-Specific DNA Purification." Genetic AnalysisTechniques and Applications. 9: 96-99 (1992).
Ito T, Smith CL, and Cantor CR "Sequence-specific DNAPurification by Triplex Affinity Capture." Proc. Natl. Acad. Sci. 89:495-498 (1992).
Ito T, Smith, CL, and Cantor, CR "Triplex Affinity Captureof a Single Copy Clone from a Yeast Genomic Library." Nucleic Acids Res. 20:3624 (1992).
Ito T, Smith CL, and Cantor CR "Sequence Specific DNA Purification by Triplex Affinity Capture." Proc. Nat. Acad. Sci. 89: 495-498 (1992).
Lechner M, Frey B, Laue F, Anton-Botella J, Smith CL, Ankenbauerand W, Schmitz GG "Swa I, a Unique Restriction Endonuclease fromStaphylococcu s warneri, which recognizes 5'-ATTTAAAT-3'." Nucleic AcidsRes. 20: 2293-2296 (1992).
Lopez-Garcia P, Abad JP, Smith CL, and Amils R "GenomicOrganization of the Halophilic Archaem Haloferax mediterranei: PhysicalMap of the Chromosome." Nucleic Acid Res. 20: 2459-2464 (1992).
Ringquist S, and Smith CL "Characterization and Physical Mappingof in vivo Dam and Dcm Methylase Resistant Sites on the Escherichiacoli Chromosome." Proc. Nat. Acad. Sci.USA 89: 4539-4543 (1992).
Saffran WA, Cantor CR, Smith ED, and Magdi M "Psoralendamage-induced plasmid recombination in Saccharomyces Cerevisiae:dependence on RAD1 and RAD52." Mutation Research. 274: 1-9 (1992).
Sainz J, Pevny L, Wu Y, Cantor CR, and Smith CL "Distribution of Interspered Repeats (Alu and K pn) on Not IRestriction Fragments of Human Chromosome 21." Proc. Nat. Acad. Sci.USA 89:1080-1084 (1992).
Sano T, Smith CL, and Cantor CR "Immuno-PCR: A Very SensitiveAntigen Detection System using an DNA-Antibody Conjugate." Science. 258:120-122 (1992).
Sano T, Glazer AN, and Cantor CR "Astreptavidin-metallothionein chimera that allows specific labeling ofbiological materials with many different heavy metal ions." Proc. Natl. Acad. Sci.USA. 89: 1534-1538 (1992).
Sano T, Smith CL, and Cantor CR "Immuno-PCR: very sensitiveantigen detection b y means of specific antibody-DNA conjugates." Science. 258:120-129 (1992).
Wang D, Fang H, Cantor CR, and Smith CL "A Contiguous NotI Restriction Map of Band q22.3 of Human Chromosome 21." Proc. Nat. Acad.Sci.USA, 89: 3222-3226 (1992).