Simon Kasif, Ph.D.

photo of Dr. KasifProfessor, Biomedical Engineering

Computational Genomics Laboratory
Curriculum Vitae

M.S. & Ph.D., Computer Science, University of Maryland
B.Sc., Mathematics, Tel Aviv University
Phone: (617) 358-1845
Fax: (617) 353-6766
Email: kasif@bu.edu
Office: LSEB 902

Research Interests

Prof. Kasif is a co-founder of the Center for Advanced Genomic Technology (CAGT) with Charles DeLisi, co-founder of COMBREX: COMPUTATIONAL BRIDGES TO EXPERIMENTS PROJECT with Rich Roberts and Martin Steffen, combrex.bu.edu), and a member of the I2B2 Center (Informatics for Integrating Biology and Bedside). He was a participant in the Human Genome Consortium that produced the first public draft of the human genome. His contributions to Computational Biology include the co-development of Glimmer, one of the most widely used gene finders in the community (with Steven Salzberg and Art Delcher), Mummer, the first whole genome comparative alignment system (with Salzberg and Delcher), early advocacy of the use of Bayesian probabilistic networks (graphical models) in Computational Biology (1992), introduction of probabilistic functional linkage networks for gene function prediction , (with Stan Letovsky), and an early deployment of network signatures of disease (with Zak Kohane and Manway Liu) for diabetes as part of I2B2 activities. Prof. Kasif systems and genomic biology/medicine group has been using advanced network and general predictive methodologies for modeling and analysis of metabolic and signaling networks and their dis-regulation in diabetes, obesity, cancer and inflammation. His group also develops new technologies and frameworks and their applications in genomic and biomedical sciences.

Publications

A complete list of publications listed chronologically by year.

A complete list of publications by number of citations.