Graduate Students in bold; Mentors in italics.
2023
DiRusso CJ, DeMaria AM, Wong J, Jordanides JJ, Whitty A, Allen KN, Gilmore TD (2023). A Conserved Core Region of the Scaffold NEMO is Essential for Signal-induced Conformational Change and Liquid-liquid Phase Separation. bioRxiv 2023.05.25.542299.
2022
David Bray*, Heather Hook*, Rose Zhao, Jessica L. Keenan, Ashley Penvose, Yemi Osayame, Nima Mohaghegh, Trevor Siggers. Customizable high-throughput platform for profiling cofactor recruitment to DNA to characterize cis-regulatory elements and screen non-coding single-nucleotide polymorphisms. Cell Genomics. doi: 10.1016/j.xgen.2022.100098
DiRusso CJ, Dashtiahangar M, Gilmore TD (2022). Scaffold proteins as dynamic integrators of biological processes. Journal of Biological Chemistry 298:102628
Hawkins, D.Y., Zuch, D.T., Huth, J., Rodriguez-Sastre, N., McCutcheon, K.R., Glick, A., Lion, A.T., Thomas, C.F., Descoteaux, A.E., Johnson, W.E., Bradham, C.A., 2022. ICAT: A Novel Algorithm to Robustly Identify Cell States Following Perturbations in Single Cell Transcriptomes. bioRxiv 2022.05.26.493603.
Rodríguez-Sastre, N., Shapiro, N., Hawkins, D.Y., Lion, A.T., Peyreau, M., Correa, A.E., Dionne, K., Bradham, C.A., 2022. Ethanol Exposure Perturbs Sea Urchin Development and Disrupts Developmental Timing. bioRxiv 2022.07.07.499183. https://doi.org/10.1101/2022.07.07.499183
2021
Aguirre Carrión PJ, LM Williams, TD Gilmore. 2021. Molecular and biochemical approaches to study the evolution of NF-κB signaling in basal metazoans. Franzoso G, F Zazzeroni, eds. Humana, New York, NY. Methods in Molecular Biology 2366: 67-91
Heather Hook, Rose Zhao, David Bray, Jessica L. Keenan, Trevor Siggers. 2021. High-throughput Analysis of the Cell- and DNA Site-Specific Binding of Native NF-κB Dimers Using Nuclear Extract Protein-Binding Microarrays (NextPBMs). Methods in Molecular Biology NF-kappaB: Methods and Protocols. doi: 10.1007/978-1-0716-1669-7_4
Diane P V Lebo, Alice Chirn, Jeffrey D Taylor, Andre Levan, Valentina Doerre Torres, Emily Agreda, Sandy B Serizier, Allison K Lord, Victoria K Jenkins, Kimberly McCall, An RNAi screen of the kinome in epithelial follicle cells of the Drosophila melanogaster ovary reveals genes required for proper germline death and clearance, G3 Genes|Genomes|Genetics, 2021, jkaa066, https://doi.org/10.1093/g3journal/jkaa066
Diane Lebo and Kimberly McCall. Murder on the Ovarian Express: A Tale of Non-Autonmous Cell Death in the Drosophila Ovary, Cells, 2021, 10(6): 1454. https://doi.org/10.3390/cells10061454
Schatzberg, D., Thomas, C.F., Reidy, P., Hadyniak, S.E., Skidanova, V., Lawton, M., Dojer, L., Kitchloo, S., Zuch, D.T., Bradham, C.A., V-type H+ ATPase Activity is Required for Embryonic Dorsal-Ventral Symmetry Breaking. bioRxiv 2021.10.18.464707
Williams LM, S Sridhar, J Samaroo, J Peart, EK Adindu, A Addanki, CJ DiRusso, BB522 Molecular Biology Laboratory, PJ Aguirre Carrión, N Rodriguez Sastre, T Siggers, TD Gilmore. 2021. Comparison of NF-κB from the protists Capsaspora owczarzakiand Acanthoeca spectabilis reveals extensive evolutionary diversification of this transcription factor. Communications Biology 4: 1404
2020
Williams, L.M. & Gilmore, T.D. (2020). Looking down on NF-κB. Molecular and Cellular Biology, 40(15): e000104-20 doi: 10.1128/MCB.00104-20
Williams, L.M., Inge, M.M. Mansfield, K.M., BB522, Gilmore, T.D. (2020). Transcription factor NF-κB in a basal metazoan, the sponge has conserved and unique sequences, activities, and regulation. Developmental & Comparative Immunology, 104: 103559.
2019
Babaei M, YK Liu, SM Wuerzberger-Davis, EZ McCaslin, CJ DiRusso, A Yeo, L Kagermazova, S Miyamoto, TD Gilmore. 2019. CRISPR/Cas9-based editing of a sensitive transcriptional regulatory element to achieve cell type-specific knockdown of the NEMO scaffold protein. PLoS ONE 14:e0222588
Lefoulon, E., Vaisman, N., Frydman, H. M., Sun, L., Foster, J and Slatko, B. E. 2019. LEFT-SEQ (Large Enriched Fragment Targeted Sequencing): “Russian Nested Dolls” capture of Wolbachia genomes. Scientific Reports, 9 (1): 5939.
Lin AY, Henry S, Reissner C, Neupert C, Kenny C, Missler M, Beffert U, Ho A. A rare autism-associated MINT2/APBA2 mutation disrupts neurexin trafficking and synaptic function. Sci Rep. 2019 Apr 15;9(1):6024. doi: 10.1038/s41598-019-42635-7. PubMed PMID: 30988517; PubMed Central PMCID: PMC6465354.
Mansfield KM & TD Gilmore. 2019. Innate immunity and cnidarian-Symbiodiniaceae mutualism. Developmental & Comparative Immunology 90: 199-209
Mohaghegh, N., Bray, D., Keenan, J., Penvose, A., Andrilenas, K. K., Ramlall, V. and Siggers, T. (2019) NextPBM: a platform to study cell-specific transcription factor binding and cooperativity., Nucleic Acids Research, 47(6), pp. e31–e31. doi: 10.1093/nar/gkz020.
Mondragon, A., Yalonetskaya, A., Ortega, A., Zhang, Y., Naranjo, O., Elguero, J., Chung, W.S., McCall, K. Lysosomal machinery drives extracellular acidification to direct non-apoptotic cell death. Cell Rep. Apr 2019, 2;27(1).
Penvose, A., Keenan, J.L., Bray, D., Ramlall, V., and Siggers, T. (2019). Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity. Nature Communications 10, 2514.
Rickner HD, Niu SY, Cheng CS. ATAC-seq Assay with Low Mitochondrial DNA Contamination from Primary Human CD4+ T Lymphocytes. J Vis Exp. 2019 Mar 22;(145). doi: 10.3791/59120. PubMed PMID: 30958473.
Rodriguez-Sastre N, Thomas CF, Bradham CA. Measuring voltage and ion concentrations in live embryos. Methods Cell Biol. 2019;151:459-472. doi: 10.1016/bs.mcb.2019.01.007. Epub 2019 Feb 23. Review. PubMed PMID: 30948026.
Shaffer R, AM DeMaria; L Kagermazova, Y Liu, M Babaei, S Caban-Penix, A Cervantes, S Jehle, L Makowski, TD Gilmore, A Whitty & KN Allen. 2019.
A central conserved region of NF-κB is required for IKKβ-induced conformational change and signal propagation. Biochemistry 58: 2906-2920
Lefoulon E, Vaisman N, Frydman HM, Sun L, Foster JM, Slatko BE. Large Enriched Fragment Targeted Sequencing (LEFT-SEQ) Applied to Capture of Wolbachia Genomes. Sci Rep. 2019 Apr 11;9(1):5939. doi: 10.1038/s41598-019-42454-w. PubMed PMID: 30976027; PubMed Central PMCID: PMC6459864.
2018
Connell AE, Zhou F, Shah MS, Murphy Q, Rickner H, Kelsen J, et al. Neonatal-Onset Chronic Diarrhea Caused by Homozygous Nonsense WNT2B Mutations. American Journal of Human Genetics. 2018;103(1).
Kamath AD, Deehan MA, Frydman HM (2018). Polar cell fate triggers Wolbachia intracellular growth. Development, 145(6)
Andrilenas KK, Ramlall V, Kurland J, Leung B, Harbaugh AG, Siggers T (2018) DNA-binding landscape of IRF3, IRF5 and IRF7 dimers: implications for dimer-specific gene regulation. Nucleic Acids Research 46: 2509-2520. PMID: 29361124.
Brennan JJ, Gilmore TD (2018) Evolutionary origins of Toll-like receptor signaling. Molecular Biology and Evolution 35: 1576-1587.
Dill TL, Naya FJ (2018) A Hearty Dose of Noncoding RNAs: The Imprinted DLK1-DIO3 Locus in Cardiac Development and Disease. J Cardiovasc Dev Dis. 5(3): 37.
Friedman L, TD Gilmore & JR Finnerty. 2018. Intraspecific variation in oxidative stress tolerance in a model cnidarian: differences in peroxide sensitivity between and within populations of Nematostella vectensis, PLoS ONE 13: e0188265
Kamath AD, Deehan MA, Frydman HM. Polar cell fate stimulates Wolbachia intracellular growth. Development. 2018 Mar 23;145(6). pii: dev158097. doi:10.1242/dev.158097.
Lodato NJ, Rampersaud A, Waxman DJ (2018) Impact of CAR agonist ligand TCPOBOP on mouse liver chromatin accessibility. Toxicol Sci. DOI: 10.1093/toxsci/kfy070. PubMed PMID: 29617930.
Matthews BJ, Waxman DJ (2018) Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver. Elife. PII: e34077. DOI: 10.7554/eLife.34077. PubMed PMID: 29757144.
Richmond CA, Rickner H, Shah MS, Ediger T, Deary L, Zhou F, et al. JAK/STAT-1 Signaling Is Required for Reserve Intestinal Stem Cell Activation during Intestinal Regeneration Following Acute Inflammation. Stem cell reports. 2018;10(1).
Santoso CS, Meehan TL, Peterson JS, Cedano TM, Turlo CV and McCall K. (2018) The ABC transporter Eato promotes cell clearance in the Drosophila melanogaster ovary. G3: Genes, Genomes, Genetics. https://doi.org/10.1534/g3.117.300427
Williams LM, Fuess LE, Brennan JJ, Mansfield KM, Salas-Rodriguez E, Welsh J, Awtry J, Banic S, Chacko C, Chezian A, Dowers D, Estrada F, Hsieh Y-H, Kang J, Li W, Malchiodi Z, Malinowski J, Matuszak S, McTigue IV T, Mueller D, Nguyen B, Nguyen M, Nguyen P, Nguyen S, Njoku N, Patel K, Pellegrini W, Pliakas T, Qadir D, Ryan E, Schiffer A, Thiel A, Yunes SA, Spilios KE, Pinzón C JH, Mydlarz LD, Gilmore TD (2018) A conserved Toll-like receptor-to-NF-kB signaling pathway in the endangered coral Orbicella faveolata. Developmental & Comparative Immunology 79: 128-136.
Yalonetskaya, A., Mondragon, A., Elguero, J., McCall, K. I spy in the developing fly a multitude of ways to die. J Dev Biol. Oct 2018, 22;6(4).
2017
Kellen Andrilenas, Brandon Leung, Amanda Chaplain, Jesse Kurland, and Trevor Siggers. Characterizing the DNA-binding differences between IRF transcription factors. In Cold Spring Harbor Laboratory – Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor, NY, 2017.
Brennan JJ, Messerschmidt JL, Williams LM, Matthews BJ, Reynoso M, Gilmore TD (2017) Sea anemone model has a single Toll-like receptor that can function in pathogen detection, NF-kB signal transduction, and development. Proceedings of the National Academy of Sciences USA 114: E10122-E10131.
Desjardins CA, Naya FJ (2017) Antagonistic regulation of cell cycle and differentiation gene programs in neonatal cardiomyocytes by homologous MEF2 transcription factors. J Biol Chem. May 4 [Epub ahead of print].
Dillon, G.M., Tyler, W.A., Omuro, K.C., Kambouris, J., Tyminski, C., Henry, S., Haydar, T.F., Beffert, U., and Ho, A. (2017). CLASP2 Links Reelin to the Cytoskeleton during Neocortical Development. Neuron 93, 1344-1358.e1345.
Lodato, N.J., Melia, T., Rampersaud, A., Waxman, D.J. (2017). Sex-differential responses of tumor promotion-associated genes and dysregulation of novel long non-coding RNAs in constitutive androstane receptor-activated mouse liver. Toxicological Sciences
Mansfield KM, Carter NM, Nguyen L, Cleves PA, Alshanbayeva A, Williams LM, Penvose A, Finnerty JR, Weis VM, Siggers T, Gilmore TD (2017) Transcription factor NF-kB is modulated by symbiotic status in a sea anemone model of cnidarian bleaching. Scientific Reports 7: 16025.
Simhadri RK, Fast EM, Guo R, Schultz MJ, Vaisman N, Ortiz L, Bybee J, Slatko BE, Frydman HM. 2017. The gut commensal microbiome of Drosophila melanogaster is modified by the endosymbiont Wolbachia. mSphere 2:e00287-17.
2016
AK Timmons, AA Mondragon, CE Schenkel, A Yalonetskaya, JD Taylor, KE Moynihan, JI Etchegaray, TL Meehan, K McCall. 2016. Phagocytosis genes nonautonomously promote developmental cell death in the Drosophila ovary. Proceedings of the National Academy of Sciences,113(9), pp.E1246-E1255.
Clark, AL, Maruyama S, Sano S, Accorsi A, Girgenrath M, Naya FJ. (2016). miR-410 and miR-495 Are Dynamically Regulated in Diverse Cardiomyopathies and Their Inhibition Attenuates Pathological Hypertrophy. PLoS One. Mar 21;11(3):e0151515.
Cotter KA, DA Nacci, D Champlin, AT Yeo, TD Gilmore & GV Callard. 2016. Adaptive significance of ERα splice variants in killifish (Fundulus heteroclitus) resident in an estrogenic environment. Endocrinology 157: 2294-2308
Desjardins CA, Naya FJ (2016) The Function of the MEF2 Transcription Factor Family in Cardiac Development, Cardiogenomics, and Direct Reprogramming. J Cardiovasc Dev Dis. 3(3): 26.
Etchegaray J.I., Elguero E.J., Tran, J., Sinatra, V., Feany, M.B. and McCall, K. Defective phagocytic corpse processing results in neurodegeneration and can be rescued by TORC1 activation. J. Neuroscience. Mar 2016, 16;36(11).
Haery L, S Mussakhan, DJ Waxman & TD Gilmore. 2016. Evidence for an oncogenic modifier role for mutant histone acetyltransferases in diffuse large B-cell lymphoma. Leukemia & Lymphoma 57: 2661-2771
Jordan M, Waxman DJ (2016) CpG-1826 immunotherapy potentiates chemotherapeutic and anti-tumor immune responses to metronomic cyclophosphamide in a preclinical glioma model. Cancer Lett. 2016 Apr 1;373(1):88-96. DOI: 10.1016/j.canlet.2015.11.029. Epub 2015 Dec 3. PubMed PMID: 26655275; PubMed Central PMCID: PMC4761486.
N Rycroft, AM Seliga, TJ Lubinski, D Stefanik, AR Jennings, J Mills, M LaBonty, A Kamath, N Hasan, A Yalonetskaya, J Reilley-Luther, RL Basu. 2016. Urban ecology: Inquiry-based and experiential laboratory exercises for urban ecosystems. Proceedings of the Association for Biology Laboratory Education, vol. 37.
2015
Andrilenas K, Penvose A, Siggers T. (2015) Using protein-binding microarrays to study transcription factor specificity. Briefings in Functional Genomics.14:17-29
Clark, AL, Naya, FJ. (2015) MicroRNAs in the MEF2-regulated Gtl2-Dio3 Noncoding RNA Locus Promote Cardiomyocyte Proliferation by Targeting the Transcriptional Co-activator Cited2. J. Biol. Chem. published 3 August 2015 doi:10.1074/jbc.M115.672659
Conforto TL, Steinhardt GF 4th, Waxman DJ. Crosstalk between Growth Hormone-regulated Transcription Factors HNF6 and CUX2 in Adult Mouse Liver. Mol
Endocrinol. 2015 Jul 28:me20151028. [Epub ahead of print] PubMed PMID: 26218442.
Doloff JC, Waxman DJ (2015). Transcriptional profiling provides insights into metronomic cyclophosphamide-activated, innate immune-dependent regression of brain tumor xenografts. BMC Cancer.15:375. doi: 10.1186/s12885-015-1358-y. PubMed PMID: 25952672.
Estrella NL1, Desjardins CA1, Nocco SE1, Clark AL1, Maksimenko Y1, Naya FJ2 (2015). MEF2 transcription factors regulate distinct gene programs in mammalian skeletal muscle differentiation. J Biol Chem. 2015 Jan 9;290(2):1256-68. doi: 10.1074/jbc.M114.589838. Epub 2014 Nov 21.
Estrella NL, Clark AL, Desjardins CA, Nocco SE, Naya FJ. MEF2D Deficiency in Neonatal Cardiomyocytes Triggers Cell Cycle Re-entry and Programmed Cell Death in Vitro. J Biol Chem. 2015 Oct 2;290(40):24367-80. doi: 10.1074/jbc.M115.666461. Epub 2015 Aug 20.
Feng Y1, Desjardins CA1, Cooper O1, Kontor A1, Nocco SE1, Naya FJ1 (2015)EGR1 Functions as a Potent Repressor of MEF2 Transcriptional Activity. PLoS One. 2015 May 26;10(5):e0127641. doi: 10.1371/journal.pone.0127641
Haery L, Thompson RC, Gilmore TD (2015). Histone acetyltransferases and histone deacetylases in B- and T-cell development, physiology and malignancy. Genes Cancer. 2015 May;6(5-6):184-213.
Meehan TL, Kleinsorge S, Timmons AK, Taylor J, and McCall K. (2015) Polarization of the epithelial layer and apical localization of integrins are required for engulfment of apoptotic cells, Disease Models and Mechanisms, doi: 8:1603-14.
Meehan, T.L., Yalonetskaya, A., Joudi, T. and McCall, K. (2015) Detection of cell death and phagocytosis in the Drosophila ovary, in Drosophila Oogenesis, Methods and Protocols, Methods in Molecular Biology series vol. 1328, Humana Press, D. Bratu and G. McNeil, eds., pp. 191-206.
Oppelt SA, Sennott EM, Tolan DR. (2015) Aldolase-B knockout in mice phenocopies hereditary fructose intolerance in humans. Mol Genet Metab. 2015 Mar;114(3):445-50.
Peterson, J.S., Timmons, A.K. , Mondragon, A.A., and McCall, K. (2015) The end of the beginning: cell death in the germline, Current Topics in Developmental Biology, 114: 93-119.
Pieck, M., Y. Yuan, J. Godfrey, C. Fisher, S. Zolj, D. Vaughan, N. Thomas, C. Wu, J. Ramos, N. Lee, J. Normanly and J. L. Celenza (2015). Auxin and tryptophan homeostasis are facilitated by the ISS1/VAS1 aromatic aminotransferase in Arabidopsis. Genetics. Published online doi: 10.1534/genetics.115.180356.
Piacentino ML, Ramachandran J, and Bradham CA (2015). Late LvAlk4/5/7 activity is required for anterior skeletal patterning in the sea urchin embryo. Development 142 (5): 943.
Schatzberg D, Lawton M, Hadyniak SE, Ross EJ, Carney T, Beane WS, Levin M, Bradham CA. (2015) Hþ/Kþ ATPase activity is required for biomineralization in sea urchin embryos. Developmental Biology 406 : 259-270.
Siggers T, Gilmore T, Barron B, Penvose A. (2015) Characterizing the DNA binding sites specificity of NF-kB with Protein Binding Microarrays. Methods in Molecular Biology 128: 609-630
Rajasekaran D, Siddiq A, Willoughby JLS, Biagi JM, Christadore LM, Yunes SA, Gredler R, Jariwala N, Robertson CL, Akiel MA, Shen X-N, Subler MA, Windle JJ, Schaus SE, Fisher PB, Hansen U, Sarkar D. (2015) Small molecule inhibitors Late SV40 Factor (LSF) abrogate hepatocellular carcinoma (HCC): Evaluation using an endogenous HCC model. Oncotarget 6:26266-26277.
Siggers T, TD Gilmore, B Barron & A Penvose. 2015. Characterizing the DNA binding site specificity of NF-κB with protein binding microarrays (PBMs). Methods in Molecular Biology 1280: 609-630
2014
Kellen Andrilenas, A Penvose, and Trevor Siggers. Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes. Briefings in Functional Genomics, 14(1):17–29, 2014.
Chen CS, Doloff JC, Waxman DJ (2014) Intermittent metronomic drug schedule is essential for activating antitumor innate immunity and tumor xenograft regression. Neoplasia 16:84-96.
Estrella NL, Naya FJ (2014) Transcriptional networks regulating the costamere, sarcomere, and other cytoskeletal structures in striated muscle. Cell Mol Life Sci. 71(9):1641-56.
Estrella NL, Desjardins CA, Nocco SE, Clark AL, Maksimenko Y, Naya FJ. MEF2 Transcription Factors Regulate Distinct Gene Programs in Mammalian Skeletal Muscle Differentiation. J Biol Chem. 2014 in press.
Haery L, JG Lugo-Picó, RA Henry, AW Andrews & TD Gilmore (2014) Histone acetyltransferase-deficient p300 mutants in diffuse large B-cell lymphoma have altered transcriptional regulatory activities and are required for optimal cell growth. Molecular Cancer 13: 29.
Sarkissian T, Timmons A, Arya R, Abdelwahid E, White K. Detecting apoptosis in Drosophila tissues and cells. Methods. 2014 Jun 15;68(1):89-96.
Siggers T, TD Gilmore, B Barron & A Penvose (2014) Characterizing the DNA binding site specificity of NF-κB with protein binding microarrays. Methods in Molecular Biology, in press.
Stefanik DJ, Lubinski TJ, Granger BR, Byrd AL, Reitzel AM, Finnerty JR. Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian. BMC Genomics. 2014 Jan 28;15:71.
Sullivan SE, Dillon GM, Sullivan JM, Ho A (2014) Mint proteins are required for synaptic activity-dependent amyloid precursor protein (APP) trafficking and amyloid b generation. Journal of Biological Chemistry, in press.
RB Rosengaus, KF Schultheis, A Yalonetskaya, MS Bulmer, WS DuComb, RW Benson, JP Thottam, V Godoy-Carter. 2014. Symbiont-derived β-1,3-glucanases in a social insect: mutualism beyond nutrition. Front Microbiol, 5, p.607.
2013
Cotter KA, Yershov A, Novillo A, Callard GV (2013) Multiple structurally distinct ERa mRNA variants in zebrafish are differentially expressed by tissue type, stage of development and estrogen exposure. Gen Comp Endocrinol 194: 217-229 (http://dx.doi.org/10.1016/j.ygcen.2013.09.014).
Griffin LB, January K, Ho K, Cotter K, Callard GV (2013) Morpholino-mediated knockdown of genes encoding estrogen receptor-a, -ba and –bb in zebrafish embryos reveals differential regulation of estrogen responsive target genes. Endocrinology 154:4158-4169 (doi10.1210/en2013-1446).
Cote S, TD Gilmore, R Schaffer, U Weber, R Bollom, MS Golden, K Glover, M Herscovitch, T Ennis, KN Allen & A Whitty. 2013. Mutation of nonessential cysteines shows that the NF-κB essential modulator (NEMO) forms a constitutive noncovalent dimer that binds IκB kinase-β (IKKβ) with high affinity. Biochemistry 52: 9141-9154 *Co-corresponding authors.
Jenkins, V.J., Timmons, A. K. and McCall, K. 2013. Diversity of cell death pathways: insight from the Drosophila ovary, Trends in Cell Biology 23: 567-574.
Layden MJ, E Rottinger, FS Wolenski, TD Gilmore & MQ Martindale (2013) Microinjection techniques for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis. Nature Protocols 8: 924-934. (Abstract Link).
Stanley Yip K, Suvorov A, Connerney J, Lodato NJ, Waxman DJ. Changes in Mouse Uterine Transcriptome in Estrus and Proestrus. Biol Reprod. 2013 Jun 5. [Epub ahead of print].
Snyder CM, Rice AL, Estrella NL, Held A, Kandarian SC, Naya FJ (2013) MEF2A regulates the Gtl2-Dio3 microRNA mega-cluster to modulate Wnt signaling in skeletal muscle regeneration. Development. 140(1):31-42.
Stefanik, D. J., Friedman, L. E., & Finnerty, J. R. 2013. Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis. Nature protocols, 8(5), 916–923.
Stefanik, D. J., Wolenski, F. S., Friedman, L. E., Gilmore, T. D., & Finnerty, J. R. 2013. Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis. Nature protocols, 8(5), 892–899.
Thompson RC, I Vardinogiannis & TD Gilmore (2013) The sensitivity of diffuse large B-cell lymphoma cell lines to histone deacetylase inhibitor-induced apoptosis is modulated by BCL-2 family protein activity. PLoS ONE 8: e62822 (Abstract Link).
Thompson RC, I Vardinogiannis & TD Gilmore (2013) Identification of an NF-κB p50-p65-responsive site in the human MIR155HG promoter. BMC Molecular Biology 14: 24.
Thompson RC, I Vardinogiannis & TD Gilmore (2013) The sensitivity of diffuse large B-cell lymphoma cell lines to histone deacetylase inhibitor-induced apoptosis is modulated by BCL-2 family protein activity. PLoS ONE 8: e62822
Timmons, A.K., Meehan, T.L., Gartmond, T.D. and McCall, K. 2013. Use of Necrosis Markers in the Drosophila Ovary, in Necrosis: Methods and Protocols, Methods in Molecular Biology series, Humana Press, McCall, K. and Klein, C., eds.
Toomey ME*, Panaram K*, Fast EM, Beatty C, & Frydman H (2013) Evolutionarily conserved Wolbachia-intrinsicfactors control differential stem cell niche tropism in the Drosophila ovary and enhance vertical transmission. Proc Natl Acad Sci U S A.
Wolenski, FS, Bradham, CA, FInnerty, JR, Gilmore, TD. NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis. Developmental Biology Volume 373, Issue 1, 1 January 2013.
Wolenski FS, MJ Layden MQ Martindale, TD Gilmore & JR Finnerty (2013) Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis. Nature Protocols 8: 900-915. (Abstract Link).
Layden MJ, E Röttinger, FS Wolenski, TD Gilmore & MQ Martindale (2013) Microinjection techniques for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis. Nature Protocols 8: 924-934.