Next Generation Sequencing

ENG BE 569

The advent of high throughput sequencing is virtually changing biology and medicine. The technology enables us to catalog the entire functional parts list of living organisms from bacteria to human, develop and validate regulatory networks for controlling gene expression in systems biology models and develop novel biomarkers for personalized medicine that guide pharmacological treatments. In this course we will review the foundations of the field, starting from the biophysical foundations of current or emerging single molecule DNA sequencing techniques, through an introduction to the analytical tools to model and analyze NGS Data, and finally discussing clinical applications such as predicting drug response focusing on cancer. The course will involve bi-weekly homework assignments that include theoretical analysis and modeling, working with multiple analysis tools for NGS data including assembly, re-sequencing, alignments, RNA-seq, ChIP-seq, DNA methylation, mutation analysis and detection, copy number variation detection, and their applications to cancer. 4 cr

FALL 2014 Schedule

Section Instructor Location Schedule Notes
A1 Kasif PHO 202 TR 4:00 pm-6:00 pm

Note that this information may change at any time. Please visit the Student Link for the most up-to-date course information.